Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AL513210.1-201ENST00000629608 234 ntBASIC17.21■□□□□ 0.35
APOEP02649 AC105339.1-204ENST00000636249 355 ntBASIC17.21■□□□□ 0.35
APOEP02649 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
APOEP02649 CYP2T1P-202ENST00000641596 2535 ntBASIC17.21■□□□□ 0.35
APOEP02649 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.21■□□□□ 0.35
APOEP02649 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
APOEP02649 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.21■□□□□ 0.34
APOEP02649 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
APOEP02649 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
APOEP02649 AL662844.4-201ENST00000606367 2838 ntBASIC17.2■□□□□ 0.34
APOEP02649 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.2■□□□□ 0.34
APOEP02649 AC026691.1-201ENST00000602502 2017 ntBASIC17.2■□□□□ 0.34
APOEP02649 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.2■□□□□ 0.34
APOEP02649 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.2■□□□□ 0.34
APOEP02649 CNN2P11-201ENST00000429351 262 ntBASIC17.2■□□□□ 0.34
APOEP02649 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.2■□□□□ 0.34
APOEP02649 KRT8P48-201ENST00000515599 1220 ntBASIC17.2■□□□□ 0.34
APOEP02649 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.2■□□□□ 0.34
APOEP02649 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
APOEP02649 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 AC022145.2-201ENST00000598203 171 ntBASIC17.2■□□□□ 0.34
APOEP02649 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.2■□□□□ 0.34
APOEP02649 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 AC020765.3-201ENST00000613051 740 ntBASIC17.2■□□□□ 0.34
APOEP02649 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 AL031731.1-201ENST00000642131 2094 ntBASIC17.2■□□□□ 0.34
APOEP02649 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
APOEP02649 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
APOEP02649 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOEP02649 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
APOEP02649 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
APOEP02649 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.19■□□□□ 0.34
APOEP02649 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 AC079140.1-201ENST00000508039 487 ntBASIC17.19■□□□□ 0.34
APOEP02649 IGHV3-62-201ENST00000520057 340 ntBASIC17.19■□□□□ 0.34
APOEP02649 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.19■□□□□ 0.34
APOEP02649 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
APOEP02649 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
APOEP02649 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.19■□□□□ 0.34
APOEP02649 AC004835.2-201ENST00000603762 682 ntBASIC17.19■□□□□ 0.34
APOEP02649 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 GPAA1P2-202ENST00000606848 1787 ntBASIC17.19■□□□□ 0.34
APOEP02649 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
APOEP02649 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
APOEP02649 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.19■□□□□ 0.34
APOEP02649 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
APOEP02649 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms