Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRIM38O00635 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM38O00635 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TRIM38O00635 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM38O00635 RN7SL589P-201ENST00000481268 310 ntBASIC16.54■□□□□ 0.24
TRIM38O00635 AC069335.1-201ENST00000489972 472 ntBASIC16.54■□□□□ 0.24
TRIM38O00635 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM38O00635 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.54■□□□□ 0.24
TRIM38O00635 AL135744.1-201ENST00000565098 629 ntBASIC16.54■□□□□ 0.24
TRIM38O00635 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM38O00635 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRIM38O00635 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRIM38O00635 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM38O00635 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM38O00635 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM38O00635 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM38O00635 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM38O00635 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 AC092474.2-201ENST00000424288 719 ntBASIC16.53■□□□□ 0.24
TRIM38O00635 KRT18P32-201ENST00000424695 1287 ntBASIC16.53■□□□□ 0.24
TRIM38O00635 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 AC067863.1-201ENST00000494933 530 ntBASIC16.53■□□□□ 0.24
TRIM38O00635 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM38O00635 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM38O00635 RARRES2P8-201ENST00000566335 367 ntBASIC16.53■□□□□ 0.24
TRIM38O00635 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM38O00635 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM38O00635 MIR4745-201ENST00000577608 62 ntBASIC16.53■□□□□ 0.24
TRIM38O00635 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM38O00635 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.53■□□□□ 0.24
TRIM38O00635 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM38O00635 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM38O00635 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM38O00635 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM38O00635 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TRIM38O00635 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 AKAP8P1-201ENST00000434743 1349 ntBASIC16.52■□□□□ 0.24
TRIM38O00635 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.52■□□□□ 0.24
TRIM38O00635 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms