Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 PIN1P1-201ENST00000412108 996 ntBASIC18.41■□□□□ 0.54
COL20A1Q9P218 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL20A1Q9P218 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.41■□□□□ 0.54
COL20A1Q9P218 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 AC004233.3-201ENST00000607794 1269 ntBASIC18.4■□□□□ 0.54
COL20A1Q9P218 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL20A1Q9P218 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL20A1Q9P218 NKILA-202ENST00000614771 2598 ntBASIC18.39■□□□□ 0.54
COL20A1Q9P218 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL20A1Q9P218 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL20A1Q9P218 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 RBM7-207ENST00000544582 692 ntTSL 3 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 AC012645.4-201ENST00000610691 1061 ntBASIC18.39■□□□□ 0.53
COL20A1Q9P218 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.39■□□□□ 0.53
COL20A1Q9P218 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 BTBD7P1-201ENST00000447253 1453 ntBASIC18.39■□□□□ 0.53
COL20A1Q9P218 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL20A1Q9P218 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.39■□□□□ 0.53
COL20A1Q9P218 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms