Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 MIR346-201ENST00000362234 95 ntBASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 AC023141.5-201ENST00000458585 616 ntBASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 AC092183.1-201ENST00000469884 875 ntBASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 AC073389.1-201ENST00000595595 795 ntBASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 AC027612.4-201ENST00000605371 583 ntBASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 UXT-AS1-201ENST00000590504 1525 ntBASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 PRYP6-201ENST00000514804 343 ntBASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AC105233.2-201ENST00000523697 349 ntBASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AF228730.5-201ENST00000530288 346 ntBASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 PCGF3-213ENST00000620529 1899 ntBASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 AC073439.1-201ENST00000624121 1774 ntBASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 LINC01144-201ENST00000626198 1710 ntBASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM39Q9HCM9 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM39Q9HCM9 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms