Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 MTHFR-217ENST00000641820 1569 ntBASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 AC002056.1-201ENST00000395613 760 ntBASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 AL355306.1-201ENST00000415580 579 ntBASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 POU5F1P6-201ENST00000466990 990 ntBASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 AL596257.1-201ENST00000641463 2694 ntBASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 LINC01144-201ENST00000626198 1710 ntBASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 SNX33P1-201ENST00000592116 1762 ntBASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.58■□□□□ 0.73
CHMP4CQ96CF2 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 SPDYE11-202ENST00000450699 704 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 SPDYE9P-201ENST00000570642 692 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 AL009183.1-201ENST00000603760 355 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 SPDYE10P-202ENST00000612005 668 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 SPDYE8P-202ENST00000612377 668 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 AC020765.3-201ENST00000613051 740 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 AC092171.3-201ENST00000610122 2651 ntBASIC19.58■□□□□ 0.72
CHMP4CQ96CF2 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 TFAMP1-201ENST00000412727 736 ntBASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 ADH5P3-201ENST00000433842 1137 ntBASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 AC093520.2-201ENST00000561830 333 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms