Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 AL355075.4-201ENST00000554988 638 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
FOXA3P55318 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.4□□□□□ -0.42
FOXA3P55318 AC141257.4-201ENST00000634557 245 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 AC136944.6-201ENST00000634818 245 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 AC016027.1-202ENST00000607927 1699 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 AP003680.1-201ENST00000598970 3660 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
FOXA3P55318 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
FOXA3P55318 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.4□□□□□ -0.42
FOXA3P55318 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
FOXA3P55318 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
FOXA3P55318 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.43
FOXA3P55318 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
FOXA3P55318 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
FOXA3P55318 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.4□□□□□ -0.43
FOXA3P55318 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 AC132938.5-201ENST00000624980 1813 ntBASIC12.39□□□□□ -0.43
FOXA3P55318 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC12.39□□□□□ -0.43
FOXA3P55318 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 TSPY20P-201ENST00000450910 630 ntBASIC12.39□□□□□ -0.43
FOXA3P55318 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 AC005332.3-201ENST00000589904 676 ntBASIC12.39□□□□□ -0.43
FOXA3P55318 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 AL138831.2-201ENST00000606564 490 ntBASIC12.39□□□□□ -0.43
FOXA3P55318 AD001527.2-201ENST00000622994 785 ntBASIC12.39□□□□□ -0.43
FOXA3P55318 AL023973.1-201ENST00000624619 620 ntBASIC12.39□□□□□ -0.43
FOXA3P55318 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA3P55318 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA3P55318 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA3P55318 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
FOXA3P55318 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA3P55318 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA3P55318 TCAF2P1-201ENST00000291129 2421 ntBASIC12.38□□□□□ -0.43
FOXA3P55318 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms