Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC22.39■■□□□ 1.18
MSH6P52701 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 MPRIPP1-201ENST00000452433 1089 ntBASIC22.39■■□□□ 1.18
MSH6P52701 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC22.39■■□□□ 1.18
MSH6P52701 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC22.39■■□□□ 1.18
MSH6P52701 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC22.39■■□□□ 1.18
MSH6P52701 CLUHP6-201ENST00000580789 941 ntBASIC22.39■■□□□ 1.18
MSH6P52701 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 AL049840.4-201ENST00000602422 811 ntBASIC22.39■■□□□ 1.18
MSH6P52701 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
MSH6P52701 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
MSH6P52701 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC22.39■■□□□ 1.18
MSH6P52701 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 GNE-204ENST00000539208 2190 ntTSL 2 BASIC22.39■■□□□ 1.17
MSH6P52701 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
MSH6P52701 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC22.39■■□□□ 1.17
MSH6P52701 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH6P52701 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH6P52701 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 RPL13AP25-201ENST00000484130 612 ntBASIC22.38■■□□□ 1.17
MSH6P52701 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH6P52701 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH6P52701 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC22.38■■□□□ 1.17
MSH6P52701 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 AL008638.5-201ENST00000623814 1298 ntBASIC22.38■■□□□ 1.17
MSH6P52701 AC244452.3-201ENST00000636814 210 ntBASIC22.38■■□□□ 1.17
MSH6P52701 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH6P52701 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 AC134312.5-201ENST00000568031 1313 ntBASIC22.38■■□□□ 1.17
MSH6P52701 GRN-222ENST00000639447 1314 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH6P52701 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 MSTO2P-201ENST00000314835 1709 ntBASIC22.38■■□□□ 1.17
MSH6P52701 GGCT-203ENST00000409144 836 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH6P52701 NUS1P3-201ENST00000423502 862 ntBASIC22.38■■□□□ 1.17
MSH6P52701 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC22.38■■□□□ 1.17
MSH6P52701 Z93015.1-201ENST00000451718 390 ntBASIC22.38■■□□□ 1.17
MSH6P52701 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 SCARNA20.5-201ENST00000516991 142 ntBASIC22.38■■□□□ 1.17
MSH6P52701 RPL8-205ENST00000527914 551 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH6P52701 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH6P52701 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH6P52701 PAM16-215ENST00000577031 548 ntTSL 4 BASIC22.38■■□□□ 1.17
MSH6P52701 SPIB-207ENST00000597855 564 ntTSL 4 BASIC22.38■■□□□ 1.17
MSH6P52701 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH6P52701 HCG18-245ENST00000602550 559 ntTSL 4 BASIC22.38■■□□□ 1.17
MSH6P52701 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
MSH6P52701 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH6P52701 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
MSH6P52701 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC22.37■■□□□ 1.17
MSH6P52701 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH6P52701 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC22.37■■□□□ 1.17
MSH6P52701 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH6P52701 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC22.37■■□□□ 1.17
MSH6P52701 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH6P52701 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH6P52701 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
MSH6P52701 AC120045.2-201ENST00000567334 178 ntBASIC22.37■■□□□ 1.17
MSH6P52701 GNRHR2-203ENST00000581100 1187 ntBASIC22.37■■□□□ 1.17
MSH6P52701 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC22.37■■□□□ 1.17
MSH6P52701 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC22.37■■□□□ 1.17
MSH6P52701 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
MSH6P52701 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
MSH6P52701 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms