Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MIR5189-201ENST00000577370 114 ntBASIC16.18■□□□□ 0.18
CXCL12P48061 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.18■□□□□ 0.18
CXCL12P48061 AL365330.1-201ENST00000607459 531 ntBASIC16.18■□□□□ 0.18
CXCL12P48061 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL12P48061 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
CXCL12P48061 Z97205.2-201ENST00000564697 1639 ntBASIC16.18■□□□□ 0.18
CXCL12P48061 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL12P48061 AL031731.1-201ENST00000642131 2094 ntBASIC16.18■□□□□ 0.18
CXCL12P48061 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CXCL12P48061 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL12P48061 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL12P48061 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL12P48061 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL12P48061 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
CXCL12P48061 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CXCL12P48061 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CXCL12P48061 AL136982.4-201ENST00000437689 1740 ntBASIC16.17■□□□□ 0.18
CXCL12P48061 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.17■□□□□ 0.18
CXCL12P48061 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 BCRP2-202ENST00000447763 634 ntBASIC16.17■□□□□ 0.18
CXCL12P48061 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.17■□□□□ 0.18
CXCL12P48061 BCRP6-201ENST00000510112 632 ntBASIC16.17■□□□□ 0.18
CXCL12P48061 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.17■□□□□ 0.18
CXCL12P48061 BCRP7-201ENST00000511549 544 ntBASIC16.17■□□□□ 0.18
CXCL12P48061 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.17■□□□□ 0.18
CXCL12P48061 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CXCL12P48061 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.17■□□□□ 0.18
CXCL12P48061 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CXCL12P48061 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CXCL12P48061 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL12P48061 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.16■□□□□ 0.18
CXCL12P48061 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.16■□□□□ 0.18
CXCL12P48061 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CXCL12P48061 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.16■□□□□ 0.18
CXCL12P48061 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.16■□□□□ 0.18
CXCL12P48061 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.16■□□□□ 0.18
CXCL12P48061 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 PFN1P12-201ENST00000455938 534 ntBASIC16.16■□□□□ 0.18
CXCL12P48061 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.16■□□□□ 0.18
CXCL12P48061 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.16■□□□□ 0.18
CXCL12P48061 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.16■□□□□ 0.18
CXCL12P48061 MIR4321-201ENST00000592276 80 ntBASIC16.16■□□□□ 0.18
CXCL12P48061 AC244093.1-201ENST00000610837 814 ntBASIC16.16■□□□□ 0.18
CXCL12P48061 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
CXCL12P48061 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.16■□□□□ 0.18
CXCL12P48061 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.16■□□□□ 0.18
CXCL12P48061 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms