Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CDX1P47902 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 AC148477.5-201ENST00000625164 1645 ntBASIC13.5□□□□□ -0.25
CDX1P47902 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
CDX1P47902 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.5□□□□□ -0.25
CDX1P47902 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 KRT18P27-201ENST00000427733 1299 ntBASIC13.5□□□□□ -0.25
CDX1P47902 PMS2P1-201ENST00000431037 1228 ntBASIC13.5□□□□□ -0.25
CDX1P47902 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.5□□□□□ -0.25
CDX1P47902 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.5□□□□□ -0.25
CDX1P47902 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 AC145285.3-201ENST00000564603 959 ntBASIC13.5□□□□□ -0.25
CDX1P47902 SDCCAG3P1-201ENST00000589292 1150 ntBASIC13.5□□□□□ -0.25
CDX1P47902 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 AC004706.3-202ENST00000621574 984 ntBASIC13.5□□□□□ -0.25
CDX1P47902 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.5□□□□□ -0.25
CDX1P47902 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CDX1P47902 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CDX1P47902 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CDX1P47902 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 REXO1L11P-201ENST00000620964 1927 ntBASIC13.49□□□□□ -0.25
CDX1P47902 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.49□□□□□ -0.25
CDX1P47902 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 AC098831.1-202ENST00000438821 336 ntBASIC13.49□□□□□ -0.25
CDX1P47902 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.49□□□□□ -0.25
CDX1P47902 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.49□□□□□ -0.25
CDX1P47902 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 AC136632.2-201ENST00000512891 861 ntBASIC13.49□□□□□ -0.25
CDX1P47902 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 AL356488.2-201ENST00000602755 427 ntBASIC13.49□□□□□ -0.25
CDX1P47902 AC005593.1-201ENST00000624894 515 ntBASIC13.49□□□□□ -0.25
CDX1P47902 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.49□□□□□ -0.25
CDX1P47902 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.49□□□□□ -0.25
CDX1P47902 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.49□□□□□ -0.25
CDX1P47902 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CDX1P47902 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
CDX1P47902 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CDX1P47902 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.48□□□□□ -0.25
CDX1P47902 AMT-250ENST00000637682 1823 ntTSL 5 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms