Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN4P29074 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN4P29074 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN4P29074 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN4P29074 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.56■□□□□ 0.24
PTPN4P29074 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.56■□□□□ 0.24
PTPN4P29074 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PTPN4P29074 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.56■□□□□ 0.24
PTPN4P29074 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
PTPN4P29074 AC005593.1-201ENST00000624894 515 ntBASIC16.56■□□□□ 0.24
PTPN4P29074 PGM5P2-202ENST00000637225 1043 ntBASIC16.56■□□□□ 0.24
PTPN4P29074 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PTPN4P29074 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.56■□□□□ 0.24
PTPN4P29074 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN4P29074 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.55■□□□□ 0.24
PTPN4P29074 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN4P29074 AC004817.3-201ENST00000602957 2129 ntBASIC16.55■□□□□ 0.24
PTPN4P29074 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN4P29074 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN4P29074 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 KRT18P27-201ENST00000427733 1299 ntBASIC16.55■□□□□ 0.24
PTPN4P29074 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.55■□□□□ 0.24
PTPN4P29074 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.55■□□□□ 0.24
PTPN4P29074 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.55■□□□□ 0.24
PTPN4P29074 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.55■□□□□ 0.24
PTPN4P29074 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 RNA5SP416-201ENST00000516838 111 ntBASIC16.55■□□□□ 0.24
PTPN4P29074 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.55■□□□□ 0.24
PTPN4P29074 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.55■□□□□ 0.24
PTPN4P29074 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.55■□□□□ 0.24
PTPN4P29074 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.55■□□□□ 0.24
PTPN4P29074 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 TNRC18P2-201ENST00000417666 2714 ntBASIC16.55■□□□□ 0.24
PTPN4P29074 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PTPN4P29074 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN4P29074 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN4P29074 AC010491.1-201ENST00000563101 2797 ntBASIC16.55■□□□□ 0.24
PTPN4P29074 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 AL020989.1-201ENST00000422979 469 ntBASIC16.54■□□□□ 0.24
PTPN4P29074 AC009947.1-201ENST00000444350 727 ntBASIC16.54■□□□□ 0.24
PTPN4P29074 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.54■□□□□ 0.24
PTPN4P29074 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.54■□□□□ 0.24
PTPN4P29074 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.54■□□□□ 0.24
PTPN4P29074 AC040169.1-201ENST00000565382 521 ntBASIC16.54■□□□□ 0.24
PTPN4P29074 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
PTPN4P29074 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms