Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
MSX1P28360 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
MSX1P28360 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.05■□□□□ 0
MSX1P28360 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.05■□□□□ 0
MSX1P28360 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
MSX1P28360 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
MSX1P28360 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
MSX1P28360 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 TFAMP1-201ENST00000412727 736 ntBASIC15.05■□□□□ -0
MSX1P28360 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
MSX1P28360 ADH5P3-201ENST00000433842 1137 ntBASIC15.05■□□□□ -0
MSX1P28360 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.05■□□□□ -0
MSX1P28360 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
MSX1P28360 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.05■□□□□ -0
MSX1P28360 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.05■□□□□ -0
MSX1P28360 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
MSX1P28360 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.05■□□□□ -0
MSX1P28360 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
MSX1P28360 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.05■□□□□ -0
MSX1P28360 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.05■□□□□ -0
MSX1P28360 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.05■□□□□ -0
MSX1P28360 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.05■□□□□ -0
MSX1P28360 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ -0
MSX1P28360 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.05■□□□□ -0
MSX1P28360 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSX1P28360 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.04■□□□□ -0
MSX1P28360 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 ME2P1-201ENST00000426028 1970 ntBASIC15.04■□□□□ -0
MSX1P28360 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
MSX1P28360 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.04■□□□□ -0
MSX1P28360 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.04■□□□□ -0
MSX1P28360 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.04■□□□□ -0
MSX1P28360 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.04■□□□□ -0
MSX1P28360 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.04■□□□□ -0
MSX1P28360 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.04■□□□□ -0
MSX1P28360 AC005498.2-205ENST00000593218 784 ntBASIC15.04■□□□□ -0
MSX1P28360 AC239800.4-201ENST00000603712 296 ntBASIC15.04■□□□□ -0
MSX1P28360 AC026120.1-201ENST00000611536 926 ntBASIC15.04■□□□□ -0
MSX1P28360 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 AC009093.7-201ENST00000623853 1223 ntBASIC15.04■□□□□ -0
MSX1P28360 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.04■□□□□ -0
MSX1P28360 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.04■□□□□ -0
MSX1P28360 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
MSX1P28360 UBALD1-205ENST00000590891 2641 ntBASIC15.04■□□□□ -0
MSX1P28360 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
MSX1P28360 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX1P28360 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
MSX1P28360 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.03■□□□□ -0
MSX1P28360 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
MSX1P28360 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.03■□□□□ -0
MSX1P28360 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.03■□□□□ -0
MSX1P28360 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
MSX1P28360 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.03■□□□□ -0
MSX1P28360 SPDYE11-202ENST00000450699 704 ntBASIC15.03■□□□□ -0
MSX1P28360 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.03■□□□□ -0
MSX1P28360 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.03■□□□□ -0
MSX1P28360 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.03■□□□□ -0
MSX1P28360 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.03■□□□□ -0
MSX1P28360 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 SPDYE9P-201ENST00000570642 692 ntBASIC15.03■□□□□ -0
MSX1P28360 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.03■□□□□ -0
MSX1P28360 AC015911.4-201ENST00000588022 1070 ntBASIC15.03■□□□□ -0
MSX1P28360 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.03■□□□□ -0
MSX1P28360 SPDYE10P-202ENST00000612005 668 ntBASIC15.03■□□□□ -0
MSX1P28360 SPDYE8P-202ENST00000612377 668 ntBASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms