Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.3□□□□□ -0.12
COL8A1P27658 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.3□□□□□ -0.12
COL8A1P27658 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 AL021578.1-201ENST00000613646 709 ntBASIC14.3□□□□□ -0.12
COL8A1P27658 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.3□□□□□ -0.12
COL8A1P27658 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL8A1P27658 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
COL8A1P27658 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.29□□□□□ -0.12
COL8A1P27658 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.29□□□□□ -0.12
COL8A1P27658 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 GPAA1P2-201ENST00000417923 928 ntBASIC14.29□□□□□ -0.12
COL8A1P27658 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.29□□□□□ -0.12
COL8A1P27658 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.29□□□□□ -0.12
COL8A1P27658 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.29□□□□□ -0.12
COL8A1P27658 SLC25A47P1-201ENST00000531577 414 ntBASIC14.29□□□□□ -0.12
COL8A1P27658 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC14.29□□□□□ -0.12
COL8A1P27658 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.29□□□□□ -0.12
COL8A1P27658 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL8A1P27658 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.29□□□□□ -0.12
COL8A1P27658 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 LINC00895-201ENST00000629028 1637 ntBASIC14.29□□□□□ -0.12
COL8A1P27658 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.29□□□□□ -0.12
COL8A1P27658 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL8A1P27658 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL8A1P27658 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC14.29□□□□□ -0.12
COL8A1P27658 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.29□□□□□ -0.12
COL8A1P27658 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
COL8A1P27658 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
COL8A1P27658 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.28□□□□□ -0.12
COL8A1P27658 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
COL8A1P27658 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
COL8A1P27658 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
COL8A1P27658 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms