Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
BDNFP23560 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 AL353705.2-201ENST00000428243 662 ntBASIC17.26■□□□□ 0.35
BDNFP23560 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.26■□□□□ 0.35
BDNFP23560 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.26■□□□□ 0.35
BDNFP23560 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 AC097493.3-201ENST00000509725 367 ntBASIC17.26■□□□□ 0.35
BDNFP23560 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.26■□□□□ 0.35
BDNFP23560 IGHV3-42-201ENST00000520410 361 ntBASIC17.26■□□□□ 0.35
BDNFP23560 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.26■□□□□ 0.35
BDNFP23560 AC011467.4-201ENST00000594891 528 ntBASIC17.26■□□□□ 0.35
BDNFP23560 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.26■□□□□ 0.35
BDNFP23560 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.26■□□□□ 0.35
BDNFP23560 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BDNFP23560 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
BDNFP23560 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
BDNFP23560 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
BDNFP23560 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.25■□□□□ 0.35
BDNFP23560 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
BDNFP23560 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
BDNFP23560 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.25■□□□□ 0.35
BDNFP23560 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.25■□□□□ 0.35
BDNFP23560 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
BDNFP23560 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.25■□□□□ 0.35
BDNFP23560 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.25■□□□□ 0.35
BDNFP23560 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.25■□□□□ 0.35
BDNFP23560 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BDNFP23560 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
BDNFP23560 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.24■□□□□ 0.35
BDNFP23560 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
BDNFP23560 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
BDNFP23560 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
BDNFP23560 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.24■□□□□ 0.35
BDNFP23560 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
BDNFP23560 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 AC092580.3-201ENST00000430932 139 ntBASIC17.24■□□□□ 0.35
BDNFP23560 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 SPCS2P1-201ENST00000561636 679 ntBASIC17.24■□□□□ 0.35
BDNFP23560 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.24■□□□□ 0.35
BDNFP23560 AC061975.2-201ENST00000581722 295 ntBASIC17.24■□□□□ 0.35
BDNFP23560 AC024267.1-201ENST00000582320 895 ntBASIC17.24■□□□□ 0.35
BDNFP23560 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.24■□□□□ 0.35
BDNFP23560 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 AL158211.3-201ENST00000607385 239 ntBASIC17.24■□□□□ 0.35
BDNFP23560 AL390754.1-201ENST00000619088 582 ntBASIC17.24■□□□□ 0.35
BDNFP23560 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
BDNFP23560 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BDNFP23560 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms