Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
MSH3P20585 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
MSH3P20585 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
MSH3P20585 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.36■□□□□ 0.21
MSH3P20585 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.36■□□□□ 0.21
MSH3P20585 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.36■□□□□ 0.21
MSH3P20585 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.36■□□□□ 0.21
MSH3P20585 RN7SL589P-201ENST00000481268 310 ntBASIC16.36■□□□□ 0.21
MSH3P20585 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.36■□□□□ 0.21
MSH3P20585 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.36■□□□□ 0.21
MSH3P20585 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.36■□□□□ 0.21
MSH3P20585 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
MSH3P20585 AL135744.1-201ENST00000565098 629 ntBASIC16.36■□□□□ 0.21
MSH3P20585 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 AC026120.1-201ENST00000611536 926 ntBASIC16.36■□□□□ 0.21
MSH3P20585 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.36■□□□□ 0.21
MSH3P20585 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.36■□□□□ 0.21
MSH3P20585 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSH3P20585 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.36■□□□□ 0.21
MSH3P20585 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.35■□□□□ 0.21
MSH3P20585 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
MSH3P20585 AC079328.2-201ENST00000561241 3354 ntBASIC16.35■□□□□ 0.21
MSH3P20585 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
MSH3P20585 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.35■□□□□ 0.21
MSH3P20585 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.35■□□□□ 0.21
MSH3P20585 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.35■□□□□ 0.21
MSH3P20585 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 AC211486.1-202ENST00000416371 468 ntBASIC16.35■□□□□ 0.21
MSH3P20585 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.35■□□□□ 0.21
MSH3P20585 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.35■□□□□ 0.21
MSH3P20585 TIMM8BP1-201ENST00000452384 211 ntBASIC16.35■□□□□ 0.21
MSH3P20585 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.35■□□□□ 0.21
MSH3P20585 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 AC211476.1-201ENST00000503899 468 ntBASIC16.35■□□□□ 0.21
MSH3P20585 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
MSH3P20585 YBX1P5-201ENST00000509441 847 ntBASIC16.35■□□□□ 0.21
MSH3P20585 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.35■□□□□ 0.21
MSH3P20585 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
MSH3P20585 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.35■□□□□ 0.21
MSH3P20585 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
MSH3P20585 LINC01144-201ENST00000626198 1710 ntBASIC16.35■□□□□ 0.21
MSH3P20585 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
MSH3P20585 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.35■□□□□ 0.21
MSH3P20585 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.35■□□□□ 0.21
MSH3P20585 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.35■□□□□ 0.21
MSH3P20585 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
MSH3P20585 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.35■□□□□ 0.21
MSH3P20585 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.35■□□□□ 0.21
MSH3P20585 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
MSH3P20585 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
MSH3P20585 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSH3P20585 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MSH3P20585 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms