Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VCANP13611 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VCANP13611 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.69■□□□□ 0.26
VCANP13611 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
VCANP13611 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.69■□□□□ 0.26
VCANP13611 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.69■□□□□ 0.26
VCANP13611 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
VCANP13611 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.68■□□□□ 0.26
VCANP13611 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.68■□□□□ 0.26
VCANP13611 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VCANP13611 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.68■□□□□ 0.26
VCANP13611 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 PGAM1P5-201ENST00000548011 764 ntBASIC16.68■□□□□ 0.26
VCANP13611 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VCANP13611 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC16.68■□□□□ 0.26
VCANP13611 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 AC024681.1-201ENST00000521917 487 ntBASIC16.68■□□□□ 0.26
VCANP13611 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.68■□□□□ 0.26
VCANP13611 NPM1P43-201ENST00000558669 786 ntBASIC16.68■□□□□ 0.26
VCANP13611 YRDCP1-201ENST00000621419 643 ntBASIC16.68■□□□□ 0.26
VCANP13611 TNXA-203ENST00000507684 2038 ntBASIC16.68■□□□□ 0.26
VCANP13611 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.68■□□□□ 0.26
VCANP13611 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCANP13611 RN7SL8P-201ENST00000461771 266 ntBASIC16.68■□□□□ 0.26
VCANP13611 RHOXF1P1-202ENST00000635473 501 ntBASIC16.68■□□□□ 0.26
VCANP13611 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VCANP13611 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.67■□□□□ 0.26
VCANP13611 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.67■□□□□ 0.26
VCANP13611 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 TOP3BP1-201ENST00000420768 1380 ntBASIC16.67■□□□□ 0.26
VCANP13611 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VCANP13611 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 AC015818.8-201ENST00000587907 1519 ntBASIC16.67■□□□□ 0.26
VCANP13611 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.67■□□□□ 0.26
VCANP13611 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 AL596276.2-201ENST00000447525 331 ntBASIC16.67■□□□□ 0.26
VCANP13611 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 RPSAP36-202ENST00000494591 1261 ntBASIC16.67■□□□□ 0.26
VCANP13611 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.67■□□□□ 0.26
VCANP13611 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.67■□□□□ 0.26
VCANP13611 FTLP5-201ENST00000586853 534 ntBASIC16.67■□□□□ 0.26
VCANP13611 AC005702.4-201ENST00000618393 416 ntBASIC16.67■□□□□ 0.26
VCANP13611 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.67■□□□□ 0.26
VCANP13611 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.67■□□□□ 0.26
VCANP13611 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCANP13611 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VCANP13611 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.67■□□□□ 0.26
VCANP13611 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 AL139008.1-201ENST00000437894 228 ntBASIC16.66■□□□□ 0.26
VCANP13611 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.66■□□□□ 0.26
VCANP13611 AC145423.3-201ENST00000615987 467 ntBASIC16.66■□□□□ 0.26
VCANP13611 AC127024.7-201ENST00000625101 200 ntBASIC16.66■□□□□ 0.26
VCANP13611 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.66■□□□□ 0.26
VCANP13611 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms