Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.9■□□□□ 0.14
HOXC4P09017 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
HOXC4P09017 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
HOXC4P09017 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.89■□□□□ 0.13
HOXC4P09017 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
HOXC4P09017 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.89■□□□□ 0.13
HOXC4P09017 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HOXC4P09017 AC114501.2-201ENST00000439631 535 ntBASIC15.89■□□□□ 0.13
HOXC4P09017 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.89■□□□□ 0.13
HOXC4P09017 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
HOXC4P09017 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.89■□□□□ 0.13
HOXC4P09017 AC004840.1-201ENST00000636359 365 ntBASIC15.89■□□□□ 0.13
HOXC4P09017 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.89■□□□□ 0.13
HOXC4P09017 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 AD000864.1-201ENST00000624076 2295 ntBASIC15.89■□□□□ 0.13
HOXC4P09017 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
HOXC4P09017 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HOXC4P09017 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
HOXC4P09017 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
HOXC4P09017 AC106820.2-201ENST00000563775 3264 ntBASIC15.88■□□□□ 0.13
HOXC4P09017 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 HIST3H2BA-201ENST00000436555 524 ntBASIC15.88■□□□□ 0.13
HOXC4P09017 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.88■□□□□ 0.13
HOXC4P09017 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.88■□□□□ 0.13
HOXC4P09017 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.88■□□□□ 0.13
HOXC4P09017 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.88■□□□□ 0.13
HOXC4P09017 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
HOXC4P09017 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
HOXC4P09017 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.88■□□□□ 0.13
HOXC4P09017 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.88■□□□□ 0.13
HOXC4P09017 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
HOXC4P09017 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HOXC4P09017 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.87■□□□□ 0.13
HOXC4P09017 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.87■□□□□ 0.13
HOXC4P09017 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.87■□□□□ 0.13
HOXC4P09017 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HOXC4P09017 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.87■□□□□ 0.13
HOXC4P09017 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HOXC4P09017 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HOXC4P09017 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms