Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 RN7SL399P-201ENST00000471648 279 ntBASIC18.87■□□□□ 0.61
COL2A1P02458 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.87■□□□□ 0.61
COL2A1P02458 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.87■□□□□ 0.61
COL2A1P02458 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.87■□□□□ 0.61
COL2A1P02458 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.87■□□□□ 0.61
COL2A1P02458 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL2A1P02458 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL2A1P02458 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL2A1P02458 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
COL2A1P02458 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL2A1P02458 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL2A1P02458 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL2A1P02458 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.86■□□□□ 0.61
COL2A1P02458 HAUS4P1-201ENST00000406739 1145 ntBASIC18.86■□□□□ 0.61
COL2A1P02458 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.86■□□□□ 0.61
COL2A1P02458 AC104596.2-201ENST00000512793 793 ntBASIC18.86■□□□□ 0.61
COL2A1P02458 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 KRT17P8-201ENST00000540749 863 ntBASIC18.86■□□□□ 0.61
COL2A1P02458 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.86■□□□□ 0.61
COL2A1P02458 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL2A1P02458 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 CDC14C-201ENST00000428251 1719 ntBASIC18.86■□□□□ 0.61
COL2A1P02458 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.86■□□□□ 0.61
COL2A1P02458 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.86■□□□□ 0.61
COL2A1P02458 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 AC009053.2-201ENST00000563701 2365 ntBASIC18.86■□□□□ 0.61
COL2A1P02458 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.86■□□□□ 0.61
COL2A1P02458 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL2A1P02458 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.86■□□□□ 0.61
COL2A1P02458 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.85■□□□□ 0.61
COL2A1P02458 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
COL2A1P02458 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.85■□□□□ 0.61
COL2A1P02458 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.85■□□□□ 0.61
COL2A1P02458 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.85■□□□□ 0.61
COL2A1P02458 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.85■□□□□ 0.61
COL2A1P02458 MIR6805-201ENST00000615055 62 ntBASIC18.85■□□□□ 0.61
COL2A1P02458 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL2A1P02458 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.85■□□□□ 0.61
COL2A1P02458 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL2A1P02458 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
COL2A1P02458 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL2A1P02458 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.85■□□□□ 0.61
COL2A1P02458 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 AL162726.2-201ENST00000438986 1017 ntBASIC18.84■□□□□ 0.61
COL2A1P02458 AC119751.2-201ENST00000504529 210 ntBASIC18.84■□□□□ 0.61
COL2A1P02458 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms