Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
LDB3O75112 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
LDB3O75112 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.46■□□□□ 0.07
LDB3O75112 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 TNRC18P3-201ENST00000441896 2691 ntBASIC15.46■□□□□ 0.07
LDB3O75112 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
LDB3O75112 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
LDB3O75112 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LDB3O75112 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 AL592309.1-201ENST00000443127 649 ntBASIC15.45■□□□□ 0.06
LDB3O75112 AC093724.1-201ENST00000448659 1027 ntBASIC15.45■□□□□ 0.06
LDB3O75112 AC004967.1-201ENST00000453589 447 ntBASIC15.45■□□□□ 0.06
LDB3O75112 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.45■□□□□ 0.06
LDB3O75112 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
LDB3O75112 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
LDB3O75112 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
LDB3O75112 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.44■□□□□ 0.06
LDB3O75112 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
LDB3O75112 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.44■□□□□ 0.06
LDB3O75112 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 AC004461.1-201ENST00000412461 403 ntBASIC15.44■□□□□ 0.06
LDB3O75112 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.44■□□□□ 0.06
LDB3O75112 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.44■□□□□ 0.06
LDB3O75112 POU5F1P6-201ENST00000466990 990 ntBASIC15.44■□□□□ 0.06
LDB3O75112 IGHV3-62-201ENST00000520057 340 ntBASIC15.44■□□□□ 0.06
LDB3O75112 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.44■□□□□ 0.06
LDB3O75112 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
LDB3O75112 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.44■□□□□ 0.06
LDB3O75112 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 AL596442.2-201ENST00000610240 980 ntBASIC15.44■□□□□ 0.06
LDB3O75112 AC008267.7-201ENST00000624570 1194 ntBASIC15.44■□□□□ 0.06
LDB3O75112 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
LDB3O75112 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.44■□□□□ 0.06
LDB3O75112 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.44■□□□□ 0.06
LDB3O75112 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.44■□□□□ 0.06
LDB3O75112 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LDB3O75112 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms