Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC140878.1-201ENST00000565277 250 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 MIR3909-201ENST00000579518 119 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC091167.2-201ENST00000579581 588 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC084121.4-201ENST00000641598 221 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AF228730.8-201ENST00000642140 221 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 UXT-AS1-201ENST00000590504 1525 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 LINC00304-203ENST00000565008 1864 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC144831.1-201ENST00000573312 2656 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 WASH6P-202ENST00000359512 1437 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 LYSMD4-203ENST00000378904 2122 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 MIR943-201ENST00000401286 94 ntBASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.17■□□□□ 0.18
TMX2-CTNND1H3BSU7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TMX2-CTNND1H3BSU7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms