Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 FAM210CP-201ENST00000445714 574 ntBASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 AC008608.2-201ENST00000606089 416 ntBASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 AC091076.1-201ENST00000610741 619 ntBASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM49D1C9J1S8 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 NORAD-201ENST00000565493 5339 ntBASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 HCG4-201ENST00000418983 998 ntBASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 AL513477.1-201ENST00000602865 2407 ntBASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 AC013268.4-201ENST00000637413 2228 ntBASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM49D1C9J1S8 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 AC005622.1-201ENST00000636801 1703 ntBASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 AC025062.2-201ENST00000605477 670 ntBASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 AP003680.1-201ENST00000598970 3660 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms