Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 AC136604.1-201ENST00000418535 575 ntBASIC20.75■□□□□ 0.91
SCN11AQ9UI33 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 NEU3-203ENST00000529024 581 ntTSL 3 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 INTS4P2-202ENST00000614726 2019 ntBASIC20.75■□□□□ 0.91
SCN11AQ9UI33 AC018665.1-201ENST00000622927 1362 ntBASIC20.75■□□□□ 0.91
SCN11AQ9UI33 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN11AQ9UI33 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AC092552.1-201ENST00000547243 906 ntBASIC20.74■□□□□ 0.91
SCN11AQ9UI33 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AP001282.1-201ENST00000531301 1499 ntBASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN11AQ9UI33 HNRNPA1P48-201ENST00000562726 1377 ntBASIC20.73■□□□□ 0.91
SCN11AQ9UI33 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 SLED1-202ENST00000512051 380 ntBASIC20.73■□□□□ 0.91
SCN11AQ9UI33 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 GNRHR2-203ENST00000581100 1187 ntBASIC20.73■□□□□ 0.91
SCN11AQ9UI33 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN11AQ9UI33 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms