Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 HLA-H-201ENST00000383620 1096 ntBASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 AC138761.1-201ENST00000584393 385 ntBASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 AC005915.1-201ENST00000624912 2018 ntBASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 PCDHB17P-201ENST00000539533 2393 ntBASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 FLJ38576-201ENST00000623820 2459 ntBASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 FAM207CP-201ENST00000443486 507 ntBASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 COX20P2-201ENST00000452636 358 ntBASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 AC098859.1-201ENST00000502915 1238 ntBASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAIPQ9BWF2 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 SPTSSB-204ENST00000617024 1292 ntBASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 AC018695.7-201ENST00000624587 2492 ntBASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms