Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.79■□□□□ 0.6
USP28Q96RU2 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 AC092919.2-201ENST00000623631 1645 ntBASIC18.79■□□□□ 0.6
USP28Q96RU2 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USP28Q96RU2 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 CRYGEP-201ENST00000412192 528 ntBASIC18.79■□□□□ 0.6
USP28Q96RU2 RHOQP3-201ENST00000437982 621 ntBASIC18.79■□□□□ 0.6
USP28Q96RU2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.79■□□□□ 0.6
USP28Q96RU2 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.79■□□□□ 0.6
USP28Q96RU2 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.79■□□□□ 0.6
USP28Q96RU2 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP28Q96RU2 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.79■□□□□ 0.6
USP28Q96RU2 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
USP28Q96RU2 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.78■□□□□ 0.6
USP28Q96RU2 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.78■□□□□ 0.6
USP28Q96RU2 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 MIR648-201ENST00000385046 94 ntBASIC18.78■□□□□ 0.6
USP28Q96RU2 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.78■□□□□ 0.6
USP28Q96RU2 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.78■□□□□ 0.6
USP28Q96RU2 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.78■□□□□ 0.6
USP28Q96RU2 AC096734.2-201ENST00000562054 433 ntBASIC18.78■□□□□ 0.6
USP28Q96RU2 AP001005.1-201ENST00000571755 1248 ntBASIC18.78■□□□□ 0.6
USP28Q96RU2 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.78■□□□□ 0.6
USP28Q96RU2 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
USP28Q96RU2 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.78■□□□□ 0.6
USP28Q96RU2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.78■□□□□ 0.6
USP28Q96RU2 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
USP28Q96RU2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
USP28Q96RU2 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP28Q96RU2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.77■□□□□ 0.6
USP28Q96RU2 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.77■□□□□ 0.6
USP28Q96RU2 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
USP28Q96RU2 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
USP28Q96RU2 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.77■□□□□ 0.6
USP28Q96RU2 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
USP28Q96RU2 AC009078.2-202ENST00000463353 338 ntBASIC18.77■□□□□ 0.6
USP28Q96RU2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
USP28Q96RU2 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.77■□□□□ 0.6
USP28Q96RU2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms