Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
ALMS1Q8TCU4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC10.85□□□□□ -0.67
ALMS1Q8TCU4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
ALMS1Q8TCU4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC10.85□□□□□ -0.67
ALMS1Q8TCU4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
ALMS1Q8TCU4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
ALMS1Q8TCU4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 GPAA1P2-202ENST00000606848 1787 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 C2orf27AP3-201ENST00000434123 579 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 RN7SL769P-201ENST00000469386 295 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AL354718.3-201ENST00000616414 581 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 CR382287.1-201ENST00000623954 586 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AL139011.1-202ENST00000642063 584 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 PRKXP1-201ENST00000561423 1122 ntBASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
ALMS1Q8TCU4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 AC005332.8-201ENST00000622750 2735 ntBASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 IMP3P2-201ENST00000489760 475 ntBASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 TUBB8P12-201ENST00000308911 1335 ntBASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 TUBB7P-202ENST00000428444 1305 ntBASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 TUBB8P7-204ENST00000567960 1332 ntBASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 RHBDF1P1-201ENST00000427504 1941 ntBASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 RNF41-210ENST00000552244 716 ntTSL 3 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
ALMS1Q8TCU4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms