Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 KRT90P-201ENST00000549264 1064 ntBASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 AC023310.1-201ENST00000554836 735 ntBASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 OR6D1P-202ENST00000641007 5290 ntBASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.32■□□□□ 0.68
SMC1BQ8NDV3 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 MIR3619-201ENST00000579667 83 ntBASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 AC061975.2-201ENST00000581722 295 ntBASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 AL391069.4-201ENST00000609583 481 ntBASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 AC244669.2-201ENST00000612320 853 ntBASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 AC138627.1-207ENST00000641560 1006 ntBASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMC1BQ8NDV3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 AC007969.1-201ENST00000433675 447 ntBASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms