Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 C20orf181-201ENST00000623918 480 ntBASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 POU5F1P6-201ENST00000466990 990 ntBASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 AC016027.1-202ENST00000607927 1699 ntBASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE3Q6ZMZ3 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 YBX2P1-201ENST00000394192 760 ntBASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE3Q6ZMZ3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 AC005052.1-201ENST00000625181 2492 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 PCDH8P1-201ENST00000428983 2773 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 AL671277.1-201ENST00000429656 993 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms