Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 AC011270.2-201ENST00000624293 2550 ntBASIC17.42■□□□□ 0.38
USP41Q3LFD5 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 AC018695.7-201ENST00000624587 2492 ntBASIC17.42■□□□□ 0.38
USP41Q3LFD5 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP41Q3LFD5 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 AC022211.2-201ENST00000585075 2527 ntBASIC17.42■□□□□ 0.38
USP41Q3LFD5 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.42■□□□□ 0.38
USP41Q3LFD5 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.41■□□□□ 0.38
USP41Q3LFD5 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 AC061975.2-201ENST00000581722 295 ntBASIC17.41■□□□□ 0.38
USP41Q3LFD5 AC026979.3-201ENST00000607315 403 ntBASIC17.41■□□□□ 0.38
USP41Q3LFD5 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP41Q3LFD5 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.41■□□□□ 0.38
USP41Q3LFD5 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 AC011676.5-201ENST00000624864 2660 ntBASIC17.4■□□□□ 0.38
USP41Q3LFD5 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 BTBD7P1-201ENST00000447253 1453 ntBASIC17.4■□□□□ 0.38
USP41Q3LFD5 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 ZNF890P-202ENST00000530367 1156 ntBASIC17.4■□□□□ 0.38
USP41Q3LFD5 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 CR383656.12-201ENST00000549567 513 ntBASIC17.4■□□□□ 0.38
USP41Q3LFD5 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms