Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HIST2H2BC-201ENST00000498492 580 ntBASIC17.08■□□□□ 0.32
CHD9Q3L8U1 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AC016396.2-201ENST00000562575 1417 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 TUBB8P12-201ENST00000308911 1335 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 TUBB7P-202ENST00000428444 1305 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 TUBB8P7-204ENST00000567960 1332 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 MIR33B-201ENST00000385104 96 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 TOMM22P5-201ENST00000416399 439 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 U82695.1-201ENST00000635752 1889 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 BX284668.4-201ENST00000453917 508 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AL139011.1-202ENST00000642063 584 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AC104306.2-201ENST00000451877 341 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 MPRIPP1-201ENST00000452433 1089 ntBASIC17.07■□□□□ 0.32
CHD9Q3L8U1 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.07■□□□□ 0.32
CHD9Q3L8U1 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 AL049840.4-201ENST00000602422 811 ntBASIC17.06■□□□□ 0.32
CHD9Q3L8U1 RHOXF1P1-202ENST00000635473 501 ntBASIC17.06■□□□□ 0.32
CHD9Q3L8U1 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 SCARNA20.5-201ENST00000516991 142 ntBASIC17.06■□□□□ 0.32
CHD9Q3L8U1 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.06■□□□□ 0.32
CHD9Q3L8U1 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHD9Q3L8U1 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms