Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
PRKDCP78527 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 AC074338.1-201ENST00000416825 156 ntBASIC11.6□□□□□ -0.55
PRKDCP78527 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC11.6□□□□□ -0.55
PRKDCP78527 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 AC023310.1-201ENST00000554836 735 ntBASIC11.6□□□□□ -0.55
PRKDCP78527 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC11.6□□□□□ -0.55
PRKDCP78527 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC11.6□□□□□ -0.55
PRKDCP78527 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC11.6□□□□□ -0.55
PRKDCP78527 AC093503.3-201ENST00000624917 2352 ntBASIC11.6□□□□□ -0.55
PRKDCP78527 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC11.6□□□□□ -0.55
PRKDCP78527 AL021920.2-201ENST00000624828 1351 ntBASIC11.6□□□□□ -0.55
PRKDCP78527 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC11.6□□□□□ -0.55
PRKDCP78527 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
PRKDCP78527 MADD-208ENST00000405573 1823 ntTSL 5 BASIC11.6□□□□□ -0.55
PRKDCP78527 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
PRKDCP78527 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
PRKDCP78527 SMS-201ENST00000379404 1174 ntTSL 3 BASIC11.59□□□□□ -0.55
PRKDCP78527 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC11.59□□□□□ -0.55
PRKDCP78527 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC11.59□□□□□ -0.55
PRKDCP78527 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 AC093525.9-201ENST00000624961 1746 ntBASIC11.59□□□□□ -0.55
PRKDCP78527 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC11.59□□□□□ -0.55
PRKDCP78527 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
PRKDCP78527 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 AC026410.3-201ENST00000514280 936 ntBASIC11.59□□□□□ -0.55
PRKDCP78527 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC11.59□□□□□ -0.55
PRKDCP78527 SDHD-202ENST00000525291 790 ntTSL 3 BASIC11.59□□□□□ -0.55
PRKDCP78527 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
PRKDCP78527 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC11.59□□□□□ -0.55
PRKDCP78527 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC11.59□□□□□ -0.55
PRKDCP78527 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 CSH2-206ENST00000560142 749 ntTSL 5 BASIC11.59□□□□□ -0.55
PRKDCP78527 DNM1P30-201ENST00000563586 452 ntBASIC11.59□□□□□ -0.55
PRKDCP78527 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC11.59□□□□□ -0.55
PRKDCP78527 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC11.59□□□□□ -0.55
PRKDCP78527 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC11.59□□□□□ -0.55
PRKDCP78527 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC11.59□□□□□ -0.55
PRKDCP78527 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
PRKDCP78527 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
PRKDCP78527 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
PRKDCP78527 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
PRKDCP78527 AC234782.1-201ENST00000451950 919 ntBASIC11.58□□□□□ -0.55
PRKDCP78527 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC11.58□□□□□ -0.55
PRKDCP78527 FOS-204ENST00000554617 796 ntTSL 2 BASIC11.58□□□□□ -0.55
PRKDCP78527 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC11.58□□□□□ -0.55
PRKDCP78527 RN7SL596P-201ENST00000582123 288 ntBASIC11.58□□□□□ -0.55
PRKDCP78527 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC11.58□□□□□ -0.55
PRKDCP78527 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
PRKDCP78527 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 AL138709.1-201ENST00000614840 1693 ntBASIC11.58□□□□□ -0.56
PRKDCP78527 AC006277.1-201ENST00000624348 1610 ntBASIC11.58□□□□□ -0.56
PRKDCP78527 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC11.58□□□□□ -0.56
PRKDCP78527 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms