Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
RNF4P78317 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 FOXO1B-201ENST00000504678 1527 ntBASIC15.22■□□□□ 0.03
RNF4P78317 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.22■□□□□ 0.03
RNF4P78317 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.21■□□□□ 0.03
RNF4P78317 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.21■□□□□ 0.03
RNF4P78317 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RNF4P78317 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.21■□□□□ 0.03
RNF4P78317 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RNF4P78317 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
RNF4P78317 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.21■□□□□ 0.03
RNF4P78317 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.21■□□□□ 0.03
RNF4P78317 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.21■□□□□ 0.03
RNF4P78317 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.21■□□□□ 0.03
RNF4P78317 AC098859.1-201ENST00000502915 1238 ntBASIC15.21■□□□□ 0.03
RNF4P78317 ALG1L8P-201ENST00000533887 760 ntBASIC15.21■□□□□ 0.03
RNF4P78317 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.21■□□□□ 0.03
RNF4P78317 AC025678.2-201ENST00000562061 970 ntBASIC15.21■□□□□ 0.03
RNF4P78317 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.21■□□□□ 0.03
RNF4P78317 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
RNF4P78317 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.21■□□□□ 0.03
RNF4P78317 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.21■□□□□ 0.03
RNF4P78317 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RNF4P78317 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.21■□□□□ 0.03
RNF4P78317 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RNF4P78317 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RNF4P78317 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
RNF4P78317 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
RNF4P78317 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
RNF4P78317 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RNF4P78317 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.21■□□□□ 0.02
RNF4P78317 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RNF4P78317 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RNF4P78317 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
RNF4P78317 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
RNF4P78317 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
RNF4P78317 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
RNF4P78317 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 AC005622.1-201ENST00000636801 1703 ntBASIC15.2■□□□□ 0.02
RNF4P78317 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
RNF4P78317 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.2■□□□□ 0.02
RNF4P78317 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RNF4P78317 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RNF4P78317 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RNF4P78317 AC026150.2-201ENST00000564693 1156 ntBASIC15.2■□□□□ 0.02
RNF4P78317 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 AP001059.3-201ENST00000619053 235 ntBASIC15.2■□□□□ 0.02
RNF4P78317 AC093028.1-201ENST00000622998 982 ntBASIC15.2■□□□□ 0.02
RNF4P78317 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
RNF4P78317 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms