Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.19■□□□□ 0.18
PKNOX1P55347 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PKNOX1P55347 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.19■□□□□ 0.18
PKNOX1P55347 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.19■□□□□ 0.18
PKNOX1P55347 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.19■□□□□ 0.18
PKNOX1P55347 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PKNOX1P55347 HCG4-201ENST00000418983 998 ntBASIC16.19■□□□□ 0.18
PKNOX1P55347 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.19■□□□□ 0.18
PKNOX1P55347 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.19■□□□□ 0.18
PKNOX1P55347 POU5F1P6-201ENST00000466990 990 ntBASIC16.19■□□□□ 0.18
PKNOX1P55347 RPS15P9-201ENST00000494093 319 ntBASIC16.19■□□□□ 0.18
PKNOX1P55347 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.19■□□□□ 0.18
PKNOX1P55347 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.19■□□□□ 0.18
PKNOX1P55347 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.19■□□□□ 0.18
PKNOX1P55347 AC087641.1-201ENST00000557561 1021 ntBASIC16.19■□□□□ 0.18
PKNOX1P55347 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.19■□□□□ 0.18
PKNOX1P55347 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.19■□□□□ 0.18
PKNOX1P55347 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 AL136379.1-201ENST00000623471 2642 ntBASIC16.19■□□□□ 0.18
PKNOX1P55347 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
PKNOX1P55347 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PKNOX1P55347 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 LINC01144-201ENST00000626198 1710 ntBASIC16.19■□□□□ 0.18
PKNOX1P55347 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.19■□□□□ 0.18
PKNOX1P55347 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PKNOX1P55347 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.19■□□□□ 0.18
PKNOX1P55347 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.19■□□□□ 0.18
PKNOX1P55347 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PKNOX1P55347 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.18■□□□□ 0.18
PKNOX1P55347 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
PKNOX1P55347 GPAA1P2-202ENST00000606848 1787 ntBASIC16.18■□□□□ 0.18
PKNOX1P55347 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.18■□□□□ 0.18
PKNOX1P55347 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
PKNOX1P55347 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.18■□□□□ 0.18
PKNOX1P55347 KRT18P27-201ENST00000427733 1299 ntBASIC16.18■□□□□ 0.18
PKNOX1P55347 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 AF238378.1-201ENST00000526806 358 ntBASIC16.18■□□□□ 0.18
PKNOX1P55347 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.18■□□□□ 0.18
PKNOX1P55347 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.18■□□□□ 0.18
PKNOX1P55347 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.18■□□□□ 0.18
PKNOX1P55347 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.18■□□□□ 0.18
PKNOX1P55347 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.18■□□□□ 0.18
PKNOX1P55347 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
PKNOX1P55347 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.18■□□□□ 0.18
PKNOX1P55347 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 PCGF3-213ENST00000620529 1899 ntBASIC16.18■□□□□ 0.18
PKNOX1P55347 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PKNOX1P55347 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 AL603832.2-201ENST00000566195 2125 ntBASIC16.18■□□□□ 0.18
PKNOX1P55347 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PKNOX1P55347 PKD1P5-201ENST00000532415 10291 ntBASIC16.17■□□□□ 0.18
PKNOX1P55347 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PKNOX1P55347 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.17■□□□□ 0.18
PKNOX1P55347 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.17■□□□□ 0.18
PKNOX1P55347 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.17■□□□□ 0.18
PKNOX1P55347 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
PKNOX1P55347 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.17■□□□□ 0.18
PKNOX1P55347 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms