Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CDH13P55290 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH13P55290 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.13■□□□□ 0.17
CDH13P55290 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.13■□□□□ 0.17
CDH13P55290 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH13P55290 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CDH13P55290 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH13P55290 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH13P55290 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH13P55290 MRPL20P1-201ENST00000400819 433 ntBASIC16.12■□□□□ 0.17
CDH13P55290 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 AC108073.2-201ENST00000464002 357 ntBASIC16.12■□□□□ 0.17
CDH13P55290 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CDH13P55290 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH13P55290 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.12■□□□□ 0.17
CDH13P55290 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 AL121912.1-201ENST00000603683 238 ntBASIC16.12■□□□□ 0.17
CDH13P55290 AC005593.1-201ENST00000624894 515 ntBASIC16.12■□□□□ 0.17
CDH13P55290 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CDH13P55290 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH13P55290 AC012569.1-201ENST00000591191 1524 ntBASIC16.12■□□□□ 0.17
CDH13P55290 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH13P55290 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH13P55290 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CDH13P55290 AP003680.1-201ENST00000598970 3660 ntBASIC16.12■□□□□ 0.17
CDH13P55290 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH13P55290 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH13P55290 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
CDH13P55290 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.11■□□□□ 0.17
CDH13P55290 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH13P55290 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
CDH13P55290 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.11■□□□□ 0.17
CDH13P55290 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH13P55290 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
CDH13P55290 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH13P55290 AC020765.3-201ENST00000613051 740 ntBASIC16.11■□□□□ 0.17
CDH13P55290 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH13P55290 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms