Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.25■□□□□ 0.67
MRE11P49959 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MRE11P49959 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MRE11P49959 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.24■□□□□ 0.67
MRE11P49959 CICP4-201ENST00000447359 2812 ntBASIC19.24■□□□□ 0.67
MRE11P49959 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MRE11P49959 PKD1P5-201ENST00000532415 10291 ntBASIC19.24■□□□□ 0.67
MRE11P49959 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC19.24■□□□□ 0.67
MRE11P49959 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC19.24■□□□□ 0.67
MRE11P49959 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 LINC00265-3P-201ENST00000447588 903 ntBASIC19.24■□□□□ 0.67
MRE11P49959 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.24■□□□□ 0.67
MRE11P49959 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
MRE11P49959 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.24■□□□□ 0.67
MRE11P49959 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MRE11P49959 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
MRE11P49959 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.24■□□□□ 0.67
MRE11P49959 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
MRE11P49959 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.24■□□□□ 0.67
MRE11P49959 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MRE11P49959 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
MRE11P49959 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.23■□□□□ 0.67
MRE11P49959 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 AC112504.1-201ENST00000623415 1841 ntBASIC19.23■□□□□ 0.67
MRE11P49959 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
MRE11P49959 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.23■□□□□ 0.67
MRE11P49959 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.23■□□□□ 0.67
MRE11P49959 KRT8P26-201ENST00000534154 1276 ntBASIC19.23■□□□□ 0.67
MRE11P49959 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.23■□□□□ 0.67
MRE11P49959 AC009154.2-201ENST00000621177 724 ntBASIC19.23■□□□□ 0.67
MRE11P49959 AC079781.4-201ENST00000641908 219 ntBASIC19.23■□□□□ 0.67
MRE11P49959 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 PRAL-201ENST00000624952 3286 ntBASIC19.23■□□□□ 0.67
MRE11P49959 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MRE11P49959 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
MRE11P49959 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
MRE11P49959 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC19.23■□□□□ 0.67
MRE11P49959 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MRE11P49959 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.22■□□□□ 0.67
MRE11P49959 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MRE11P49959 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
MRE11P49959 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MRE11P49959 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MRE11P49959 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC19.22■□□□□ 0.67
MRE11P49959 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.22■□□□□ 0.67
MRE11P49959 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.22■□□□□ 0.67
MRE11P49959 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MRE11P49959 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.22■□□□□ 0.67
MRE11P49959 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC19.22■□□□□ 0.67
MRE11P49959 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC19.22■□□□□ 0.67
MRE11P49959 AL359258.3-201ENST00000622910 2331 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms