Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN4AP35499 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.04■□□□□ 0.64
SCN4AP35499 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN4AP35499 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.04■□□□□ 0.64
SCN4AP35499 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN4AP35499 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.03■□□□□ 0.64
SCN4AP35499 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
SCN4AP35499 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.03■□□□□ 0.64
SCN4AP35499 MIR1202-201ENST00000408529 83 ntBASIC19.03■□□□□ 0.64
SCN4AP35499 CNN2P10-201ENST00000443067 918 ntBASIC19.03■□□□□ 0.64
SCN4AP35499 RPSAP36-202ENST00000494591 1261 ntBASIC19.03■□□□□ 0.64
SCN4AP35499 SLED1-202ENST00000512051 380 ntBASIC19.03■□□□□ 0.64
SCN4AP35499 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.03■□□□□ 0.64
SCN4AP35499 AC107373.2-201ENST00000607735 490 ntBASIC19.03■□□□□ 0.64
SCN4AP35499 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.03■□□□□ 0.64
SCN4AP35499 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SCN4AP35499 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SCN4AP35499 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN4AP35499 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN4AP35499 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN4AP35499 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN4AP35499 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
SCN4AP35499 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN4AP35499 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19.02■□□□□ 0.64
SCN4AP35499 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.02■□□□□ 0.64
SCN4AP35499 HOMER2P2-201ENST00000451621 847 ntBASIC19.02■□□□□ 0.64
SCN4AP35499 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.02■□□□□ 0.64
SCN4AP35499 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.02■□□□□ 0.64
SCN4AP35499 AC000095.1-201ENST00000603208 874 ntBASIC19.02■□□□□ 0.64
SCN4AP35499 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.02■□□□□ 0.64
SCN4AP35499 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SCN4AP35499 AL096828.3-201ENST00000615354 462 ntBASIC19.02■□□□□ 0.64
SCN4AP35499 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SCN4AP35499 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 REXO1L8P-201ENST00000604378 1897 ntBASIC19.02■□□□□ 0.64
SCN4AP35499 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN4AP35499 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SCN4AP35499 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SCN4AP35499 PCGF3-213ENST00000620529 1899 ntBASIC19.02■□□□□ 0.63
SCN4AP35499 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
SCN4AP35499 AC004987.2-201ENST00000395959 1148 ntBASIC19.02■□□□□ 0.63
SCN4AP35499 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
SCN4AP35499 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SCN4AP35499 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.02■□□□□ 0.63
SCN4AP35499 IMP3P2-201ENST00000489760 475 ntBASIC19.02■□□□□ 0.63
SCN4AP35499 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.02■□□□□ 0.63
SCN4AP35499 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.02■□□□□ 0.63
SCN4AP35499 EEF1DP1-201ENST00000585891 896 ntBASIC19.02■□□□□ 0.63
SCN4AP35499 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.02■□□□□ 0.63
SCN4AP35499 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
SCN4AP35499 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SCN4AP35499 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SCN4AP35499 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SCN4AP35499 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.01■□□□□ 0.63
SCN4AP35499 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.01■□□□□ 0.63
SCN4AP35499 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.01■□□□□ 0.63
SCN4AP35499 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.01■□□□□ 0.63
SCN4AP35499 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.01■□□□□ 0.63
SCN4AP35499 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.01■□□□□ 0.63
SCN4AP35499 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC19.01■□□□□ 0.63
SCN4AP35499 MIR4741-201ENST00000579822 90 ntBASIC19.01■□□□□ 0.63
SCN4AP35499 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.01■□□□□ 0.63
SCN4AP35499 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.01■□□□□ 0.63
SCN4AP35499 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SCN4AP35499 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SCN4AP35499 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms