Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LIG1P18858 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LIG1P18858 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIG1P18858 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
LIG1P18858 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
LIG1P18858 PTCHD3P3-201ENST00000403073 906 ntBASIC18.98■□□□□ 0.63
LIG1P18858 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.98■□□□□ 0.63
LIG1P18858 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.98■□□□□ 0.63
LIG1P18858 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG1P18858 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG1P18858 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.98■□□□□ 0.63
LIG1P18858 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
LIG1P18858 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG1P18858 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG1P18858 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG1P18858 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIG1P18858 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG1P18858 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
LIG1P18858 ZNF259P1-201ENST00000407656 1365 ntBASIC18.97■□□□□ 0.63
LIG1P18858 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
LIG1P18858 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIG1P18858 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIG1P18858 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
LIG1P18858 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG1P18858 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.97■□□□□ 0.63
LIG1P18858 AC087163.2-201ENST00000457299 853 ntBASIC18.97■□□□□ 0.63
LIG1P18858 RPS15P9-201ENST00000494093 319 ntBASIC18.97■□□□□ 0.63
LIG1P18858 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
LIG1P18858 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG1P18858 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
LIG1P18858 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LIG1P18858 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 SLC22A20-204ENST00000530038 1673 ntBASIC18.97■□□□□ 0.63
LIG1P18858 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.97■□□□□ 0.63
LIG1P18858 DBET-201ENST00000630918 3363 ntBASIC18.97■□□□□ 0.63
LIG1P18858 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIG1P18858 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIG1P18858 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.96■□□□□ 0.63
LIG1P18858 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.96■□□□□ 0.63
LIG1P18858 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIG1P18858 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.96■□□□□ 0.63
LIG1P18858 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.96■□□□□ 0.63
LIG1P18858 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
LIG1P18858 PMS2P1-201ENST00000431037 1228 ntBASIC18.96■□□□□ 0.63
LIG1P18858 AC007967.2-201ENST00000432613 625 ntBASIC18.96■□□□□ 0.63
LIG1P18858 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.96■□□□□ 0.63
LIG1P18858 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 AC108751.1-201ENST00000490852 363 ntBASIC18.96■□□□□ 0.63
LIG1P18858 POLD2P1-201ENST00000511220 997 ntBASIC18.96■□□□□ 0.63
LIG1P18858 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.96■□□□□ 0.63
LIG1P18858 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.96■□□□□ 0.63
LIG1P18858 AC106730.1-201ENST00000566722 1090 ntBASIC18.96■□□□□ 0.63
LIG1P18858 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 Z83851.2-201ENST00000609564 659 ntBASIC18.96■□□□□ 0.63
LIG1P18858 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG1P18858 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.95■□□□□ 0.62
LIG1P18858 AC104640.1-201ENST00000562617 2109 ntBASIC18.95■□□□□ 0.62
LIG1P18858 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms