Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 MIR648-201ENST00000385046 94 ntBASIC15.67■□□□□ 0.1
SDC1P18827 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.67■□□□□ 0.1
SDC1P18827 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 HCG4B-203ENST00000450128 991 ntBASIC15.67■□□□□ 0.1
SDC1P18827 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.67■□□□□ 0.1
SDC1P18827 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.67■□□□□ 0.1
SDC1P18827 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.67■□□□□ 0.1
SDC1P18827 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
SDC1P18827 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
SDC1P18827 AC010507.1-201ENST00000633895 436 ntBASIC15.67■□□□□ 0.1
SDC1P18827 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.67■□□□□ 0.1
SDC1P18827 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SDC1P18827 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SDC1P18827 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.66■□□□□ 0.1
SDC1P18827 U82695.1-201ENST00000635752 1889 ntBASIC15.66■□□□□ 0.1
SDC1P18827 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 CRYGEP-201ENST00000412192 528 ntBASIC15.66■□□□□ 0.1
SDC1P18827 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.66■□□□□ 0.1
SDC1P18827 RNA5SP415-201ENST00000517246 115 ntBASIC15.66■□□□□ 0.1
SDC1P18827 IGHV3-22-201ENST00000520721 359 ntBASIC15.66■□□□□ 0.1
SDC1P18827 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SDC1P18827 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.66■□□□□ 0.1
SDC1P18827 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.66■□□□□ 0.1
SDC1P18827 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.66■□□□□ 0.1
SDC1P18827 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.66■□□□□ 0.1
SDC1P18827 AP005117.1-202ENST00000581724 1908 ntBASIC15.66■□□□□ 0.1
SDC1P18827 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SDC1P18827 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDC1P18827 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SDC1P18827 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.65■□□□□ 0.1
SDC1P18827 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SDC1P18827 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SDC1P18827 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms