Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TNFP01375 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TNFP01375 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16■□□□□ 0.15
TNFP01375 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16■□□□□ 0.15
TNFP01375 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 MIR661-201ENST00000384842 89 ntBASIC15.99■□□□□ 0.15
TNFP01375 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 MRPS18AP1-201ENST00000414458 589 ntBASIC15.99■□□□□ 0.15
TNFP01375 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.99■□□□□ 0.15
TNFP01375 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.99■□□□□ 0.15
TNFP01375 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.99■□□□□ 0.15
TNFP01375 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.99■□□□□ 0.15
TNFP01375 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.99■□□□□ 0.15
TNFP01375 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.99■□□□□ 0.15
TNFP01375 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.99■□□□□ 0.15
TNFP01375 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 HLA-A-202ENST00000376806 1854 ntBASIC15.99■□□□□ 0.15
TNFP01375 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TNFP01375 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
TNFP01375 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.98■□□□□ 0.15
TNFP01375 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 AC078925.2-201ENST00000624013 1973 ntBASIC15.98■□□□□ 0.15
TNFP01375 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
TNFP01375 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.98■□□□□ 0.15
TNFP01375 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TNFP01375 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.98■□□□□ 0.15
TNFP01375 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.98■□□□□ 0.15
TNFP01375 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.98■□□□□ 0.15
TNFP01375 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.98■□□□□ 0.15
TNFP01375 AL365330.1-201ENST00000607459 531 ntBASIC15.98■□□□□ 0.15
TNFP01375 AC009118.2-201ENST00000613275 655 ntBASIC15.98■□□□□ 0.15
TNFP01375 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 RNF216P1-203ENST00000404404 2427 ntBASIC15.98■□□□□ 0.15
TNFP01375 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TNFP01375 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.98■□□□□ 0.15
TNFP01375 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.98■□□□□ 0.15
TNFP01375 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.98■□□□□ 0.15
TNFP01375 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.97■□□□□ 0.15
TNFP01375 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TNFP01375 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms