Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC005622.1-201ENST00000636801 1703 ntBASIC16.11■□□□□ 0.17
SIX3O95343 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 PRAL-201ENST00000624952 3286 ntBASIC16.1■□□□□ 0.17
SIX3O95343 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 AC004870.1-201ENST00000315132 882 ntBASIC16.1■□□□□ 0.17
SIX3O95343 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.1■□□□□ 0.17
SIX3O95343 RNU1-129P-201ENST00000384064 167 ntBASIC16.1■□□□□ 0.17
SIX3O95343 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.1■□□□□ 0.17
SIX3O95343 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 U1.21-201ENST00000580816 167 ntBASIC16.1■□□□□ 0.17
SIX3O95343 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.1■□□□□ 0.17
SIX3O95343 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SIX3O95343 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.1■□□□□ 0.17
SIX3O95343 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.1■□□□□ 0.17
SIX3O95343 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
SIX3O95343 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX3O95343 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SIX3O95343 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SIX3O95343 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 MRPL3P1-201ENST00000400109 1033 ntBASIC16.09■□□□□ 0.17
SIX3O95343 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SIX3O95343 IGLL3P-201ENST00000412472 434 ntBASIC16.09■□□□□ 0.17
SIX3O95343 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.09■□□□□ 0.17
SIX3O95343 AL450487.1-201ENST00000426799 995 ntBASIC16.09■□□□□ 0.17
SIX3O95343 TPM4P1-201ENST00000436100 807 ntBASIC16.09■□□□□ 0.17
SIX3O95343 PRSS29P-201ENST00000440800 595 ntBASIC16.09■□□□□ 0.17
SIX3O95343 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SIX3O95343 AL513480.1-201ENST00000451731 511 ntBASIC16.09■□□□□ 0.17
SIX3O95343 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.09■□□□□ 0.17
SIX3O95343 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX3O95343 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.09■□□□□ 0.17
SIX3O95343 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX3O95343 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.09■□□□□ 0.17
SIX3O95343 AC116407.3-201ENST00000623905 1129 ntBASIC16.09■□□□□ 0.17
SIX3O95343 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.09■□□□□ 0.17
SIX3O95343 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SIX3O95343 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
SIX3O95343 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
SIX3O95343 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.09■□□□□ 0.17
SIX3O95343 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX3O95343 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
SIX3O95343 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
SIX3O95343 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.08■□□□□ 0.17
SIX3O95343 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
SIX3O95343 CDC14C-201ENST00000428251 1719 ntBASIC16.08■□□□□ 0.17
SIX3O95343 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.08■□□□□ 0.17
SIX3O95343 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
SIX3O95343 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SIX3O95343 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SIX3O95343 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX3O95343 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.08■□□□□ 0.16
SIX3O95343 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
SIX3O95343 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX3O95343 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms