Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.12■□□□□ 0.65
CDKL5O76039 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CDKL5O76039 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.12■□□□□ 0.65
CDKL5O76039 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.12■□□□□ 0.65
CDKL5O76039 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.12■□□□□ 0.65
CDKL5O76039 AC040169.1-201ENST00000565382 521 ntBASIC19.12■□□□□ 0.65
CDKL5O76039 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.12■□□□□ 0.65
CDKL5O76039 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.12■□□□□ 0.65
CDKL5O76039 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDKL5O76039 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
CDKL5O76039 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CDKL5O76039 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CDKL5O76039 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
CDKL5O76039 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.11■□□□□ 0.65
CDKL5O76039 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.11■□□□□ 0.65
CDKL5O76039 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.11■□□□□ 0.65
CDKL5O76039 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.11■□□□□ 0.65
CDKL5O76039 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.11■□□□□ 0.65
CDKL5O76039 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.11■□□□□ 0.65
CDKL5O76039 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.11■□□□□ 0.65
CDKL5O76039 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CDKL5O76039 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CDKL5O76039 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CDKL5O76039 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CDKL5O76039 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 AC018695.7-201ENST00000624587 2492 ntBASIC19.11■□□□□ 0.65
CDKL5O76039 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.11■□□□□ 0.65
CDKL5O76039 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.11■□□□□ 0.65
CDKL5O76039 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDKL5O76039 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CDKL5O76039 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.1■□□□□ 0.65
CDKL5O76039 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
CDKL5O76039 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CDKL5O76039 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CDKL5O76039 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.1■□□□□ 0.65
CDKL5O76039 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.1■□□□□ 0.65
CDKL5O76039 MIR940-201ENST00000401276 94 ntBASIC19.1■□□□□ 0.65
CDKL5O76039 AC002347.1-201ENST00000569543 541 ntBASIC19.1■□□□□ 0.65
CDKL5O76039 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CDKL5O76039 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CDKL5O76039 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CDKL5O76039 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
CDKL5O76039 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDKL5O76039 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
CDKL5O76039 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CDKL5O76039 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms