Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PHGDHO43175 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PHGDHO43175 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PHGDHO43175 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
PHGDHO43175 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 TSPY26P-202ENST00000565928 3884 ntBASIC16.41■□□□□ 0.22
PHGDHO43175 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.41■□□□□ 0.22
PHGDHO43175 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
PHGDHO43175 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.41■□□□□ 0.22
PHGDHO43175 KRT18P67-201ENST00000432816 1264 ntBASIC16.41■□□□□ 0.22
PHGDHO43175 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.41■□□□□ 0.22
PHGDHO43175 AF186996.4-201ENST00000467186 377 ntBASIC16.41■□□□□ 0.22
PHGDHO43175 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PHGDHO43175 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.41■□□□□ 0.22
PHGDHO43175 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 ACTL9-202ENST00000612068 1252 ntBASIC16.41■□□□□ 0.22
PHGDHO43175 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PHGDHO43175 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PHGDHO43175 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.41■□□□□ 0.22
PHGDHO43175 AC068418.2-201ENST00000577309 3703 ntBASIC16.41■□□□□ 0.22
PHGDHO43175 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PHGDHO43175 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.4■□□□□ 0.22
PHGDHO43175 AC012569.1-201ENST00000591191 1524 ntBASIC16.4■□□□□ 0.22
PHGDHO43175 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.4■□□□□ 0.22
PHGDHO43175 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PHGDHO43175 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PHGDHO43175 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 AC079781.3-201ENST00000449110 356 ntBASIC16.4■□□□□ 0.22
PHGDHO43175 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.4■□□□□ 0.22
PHGDHO43175 AC117500.6-201ENST00000624871 588 ntBASIC16.4■□□□□ 0.22
PHGDHO43175 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.4■□□□□ 0.22
PHGDHO43175 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.4■□□□□ 0.22
PHGDHO43175 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PHGDHO43175 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PHGDHO43175 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PHGDHO43175 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.4■□□□□ 0.22
PHGDHO43175 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PHGDHO43175 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
PHGDHO43175 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.39■□□□□ 0.22
PHGDHO43175 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PHGDHO43175 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.39■□□□□ 0.21
PHGDHO43175 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.39■□□□□ 0.21
PHGDHO43175 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PHGDHO43175 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PHGDHO43175 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.39■□□□□ 0.21
PHGDHO43175 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PHGDHO43175 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.39■□□□□ 0.21
PHGDHO43175 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.39■□□□□ 0.21
PHGDHO43175 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PHGDHO43175 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.39■□□□□ 0.21
PHGDHO43175 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.39■□□□□ 0.21
PHGDHO43175 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.39■□□□□ 0.21
PHGDHO43175 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
PHGDHO43175 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PHGDHO43175 AC020765.3-201ENST00000613051 740 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms