Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP3B1O00203 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP3B1O00203 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
AP3B1O00203 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP3B1O00203 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP3B1O00203 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP3B1O00203 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
AP3B1O00203 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
AP3B1O00203 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
AP3B1O00203 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP3B1O00203 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.64■□□□□ 0.26
AP3B1O00203 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.64■□□□□ 0.26
AP3B1O00203 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
AP3B1O00203 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 IGLL3P-201ENST00000412472 434 ntBASIC16.64■□□□□ 0.25
AP3B1O00203 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 KRT18P34-201ENST00000488218 1270 ntBASIC16.64■□□□□ 0.25
AP3B1O00203 RNA5SP419-201ENST00000515908 135 ntBASIC16.64■□□□□ 0.25
AP3B1O00203 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.64■□□□□ 0.25
AP3B1O00203 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.64■□□□□ 0.25
AP3B1O00203 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.64■□□□□ 0.25
AP3B1O00203 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
AP3B1O00203 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
AP3B1O00203 Z83851.2-201ENST00000609564 659 ntBASIC16.64■□□□□ 0.25
AP3B1O00203 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
AP3B1O00203 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP3B1O00203 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.64■□□□□ 0.25
AP3B1O00203 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
AP3B1O00203 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.63■□□□□ 0.25
AP3B1O00203 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.63■□□□□ 0.25
AP3B1O00203 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.63■□□□□ 0.25
AP3B1O00203 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.63■□□□□ 0.25
AP3B1O00203 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.63■□□□□ 0.25
AP3B1O00203 AL009183.1-201ENST00000603760 355 ntBASIC16.63■□□□□ 0.25
AP3B1O00203 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.63■□□□□ 0.25
AP3B1O00203 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.63■□□□□ 0.25
AP3B1O00203 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP3B1O00203 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms