Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TM9SF3Q9HD45 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TM9SF3Q9HD45 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.79■■□□□ 1.4
TM9SF3Q9HD45 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.79■■□□□ 1.4
TM9SF3Q9HD45 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.79■■□□□ 1.4
TM9SF3Q9HD45 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.79■■□□□ 1.4
TM9SF3Q9HD45 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
TM9SF3Q9HD45 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TM9SF3Q9HD45 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.78■■□□□ 1.4
TM9SF3Q9HD45 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.78■■□□□ 1.4
TM9SF3Q9HD45 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TM9SF3Q9HD45 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TM9SF3Q9HD45 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
TM9SF3Q9HD45 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.77■■□□□ 1.4
TM9SF3Q9HD45 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TM9SF3Q9HD45 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.4
TM9SF3Q9HD45 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TM9SF3Q9HD45 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.76■■□□□ 1.39
TM9SF3Q9HD45 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TM9SF3Q9HD45 UNC93B8-201ENST00000511903 705 ntBASIC23.76■■□□□ 1.39
TM9SF3Q9HD45 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TM9SF3Q9HD45 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TM9SF3Q9HD45 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TM9SF3Q9HD45 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 AC120024.1-201ENST00000562672 995 ntBASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 AC008406.3-201ENST00000620001 1374 ntBASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.75■■□□□ 1.39
TM9SF3Q9HD45 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 AC137630.3-201ENST00000607245 391 ntBASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TM9SF3Q9HD45 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 AP004609.3-201ENST00000610705 1884 ntBASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TM9SF3Q9HD45 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
TM9SF3Q9HD45 KRT16P3-201ENST00000439127 1283 ntBASIC23.72■■□□□ 1.39
TM9SF3Q9HD45 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.72■■□□□ 1.39
TM9SF3Q9HD45 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.71■■□□□ 1.39
TM9SF3Q9HD45 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
TM9SF3Q9HD45 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
TM9SF3Q9HD45 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TM9SF3Q9HD45 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.71■■□□□ 1.39
TM9SF3Q9HD45 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.71■■□□□ 1.39
TM9SF3Q9HD45 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
TM9SF3Q9HD45 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
TM9SF3Q9HD45 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.7■■□□□ 1.38
TM9SF3Q9HD45 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
TM9SF3Q9HD45 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
TM9SF3Q9HD45 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 AC021242.3-201ENST00000607598 1377 ntBASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 TSPY9P-201ENST00000440215 945 ntBASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 TSPY11P-201ENST00000442607 1045 ntBASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.68■■□□□ 1.38
TM9SF3Q9HD45 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TM9SF3Q9HD45 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TM9SF3Q9HD45 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TM9SF3Q9HD45 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.67■■□□□ 1.38
TM9SF3Q9HD45 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.67■■□□□ 1.38
TM9SF3Q9HD45 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TM9SF3Q9HD45 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TM9SF3Q9HD45 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms