Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.17■■■□□ 2.58
RTF1Q92541 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.17■■■□□ 2.58
RTF1Q92541 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RTF1Q92541 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RTF1Q92541 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RTF1Q92541 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
RTF1Q92541 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
RTF1Q92541 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
RTF1Q92541 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
RTF1Q92541 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
RTF1Q92541 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
RTF1Q92541 THA1P-201ENST00000590384 1145 ntBASIC31.16■■■□□ 2.58
RTF1Q92541 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
RTF1Q92541 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
RTF1Q92541 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.15■■■□□ 2.58
RTF1Q92541 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.15■■■□□ 2.58
RTF1Q92541 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC31.15■■■□□ 2.58
RTF1Q92541 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.15■■■□□ 2.58
RTF1Q92541 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC31.15■■■□□ 2.58
RTF1Q92541 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
RTF1Q92541 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.58
RTF1Q92541 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.14■■■□□ 2.58
RTF1Q92541 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.58
RTF1Q92541 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.57
RTF1Q92541 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
RTF1Q92541 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
RTF1Q92541 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.13■■■□□ 2.57
RTF1Q92541 AC120024.1-201ENST00000562672 995 ntBASIC31.13■■■□□ 2.57
RTF1Q92541 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
RTF1Q92541 AC096887.2-201ENST00000623443 1957 ntBASIC31.12■■■□□ 2.57
RTF1Q92541 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
RTF1Q92541 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC31.12■■■□□ 2.57
RTF1Q92541 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC31.12■■■□□ 2.57
RTF1Q92541 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
RTF1Q92541 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
RTF1Q92541 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RTF1Q92541 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RTF1Q92541 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
RTF1Q92541 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RTF1Q92541 AC239859.2-201ENST00000444165 318 ntBASIC31.11■■■□□ 2.57
RTF1Q92541 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC31.11■■■□□ 2.57
RTF1Q92541 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.11■■■□□ 2.57
RTF1Q92541 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RTF1Q92541 AC010501.1-201ENST00000606270 1962 ntBASIC31.09■■■□□ 2.57
RTF1Q92541 GUSBP5-201ENST00000418136 578 ntBASIC31.09■■■□□ 2.57
RTF1Q92541 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC31.09■■■□□ 2.57
RTF1Q92541 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC31.09■■■□□ 2.57
RTF1Q92541 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
RTF1Q92541 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
RTF1Q92541 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31.08■■■□□ 2.57
RTF1Q92541 Z92544.1-202ENST00000571933 1220 ntBASIC31.08■■■□□ 2.57
RTF1Q92541 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.08■■■□□ 2.57
RTF1Q92541 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
RTF1Q92541 AC092803.2-201ENST00000564287 1899 ntBASIC31.08■■■□□ 2.57
RTF1Q92541 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.08■■■□□ 2.57
RTF1Q92541 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31.07■■■□□ 2.57
RTF1Q92541 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
RTF1Q92541 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.07■■■□□ 2.56
RTF1Q92541 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31.07■■■□□ 2.56
RTF1Q92541 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
RTF1Q92541 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
RTF1Q92541 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RTF1Q92541 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RTF1Q92541 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
RTF1Q92541 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31.06■■■□□ 2.56
RTF1Q92541 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
RTF1Q92541 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.05■■■□□ 2.56
RTF1Q92541 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC31.05■■■□□ 2.56
RTF1Q92541 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
RTF1Q92541 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC31.05■■■□□ 2.56
RTF1Q92541 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.05■■■□□ 2.56
RTF1Q92541 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
RTF1Q92541 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RTF1Q92541 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RTF1Q92541 AC097639.1-201ENST00000565519 1891 ntBASIC31.04■■■□□ 2.56
RTF1Q92541 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
RTF1Q92541 BX664725.1-201ENST00000438252 379 ntBASIC31.04■■■□□ 2.56
RTF1Q92541 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RTF1Q92541 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
RTF1Q92541 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RTF1Q92541 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
RTF1Q92541 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RTF1Q92541 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
RTF1Q92541 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
RTF1Q92541 FOXO3B-201ENST00000395675 1928 ntBASIC31.02■■■□□ 2.56
RTF1Q92541 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.01■■■□□ 2.56
RTF1Q92541 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
RTF1Q92541 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
RTF1Q92541 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.01■■■□□ 2.55
RTF1Q92541 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
RTF1Q92541 KRT125P-201ENST00000546827 989 ntBASIC31.01■■■□□ 2.55
RTF1Q92541 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
RTF1Q92541 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
RTF1Q92541 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.55
RTF1Q92541 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31■■■□□ 2.55
RTF1Q92541 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
RTF1Q92541 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
RTF1Q92541 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
RTF1Q92541 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
RTF1Q92541 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.99■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms