Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 MIR6724-1-201ENST00000616420 92 ntBASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 MIR6724-2-201ENST00000616483 92 ntBASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 MIR6724-4-201ENST00000617390 92 ntBASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 MIR6724-3-201ENST00000622482 92 ntBASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 BX255925.1-201ENST00000566954 1854 ntBASIC19.78■□□□□ 0.76
CSPG4Q6UVK1 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CSPG4Q6UVK1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.77■□□□□ 0.76
CSPG4Q6UVK1 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.77■□□□□ 0.76
CSPG4Q6UVK1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.77■□□□□ 0.76
CSPG4Q6UVK1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.77■□□□□ 0.76
CSPG4Q6UVK1 AC106739.1-201ENST00000617035 715 ntBASIC19.77■□□□□ 0.76
CSPG4Q6UVK1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CSPG4Q6UVK1 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CSPG4Q6UVK1 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CSPG4Q6UVK1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CSPG4Q6UVK1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CSPG4Q6UVK1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.75■□□□□ 0.75
CSPG4Q6UVK1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.75■□□□□ 0.75
CSPG4Q6UVK1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CSPG4Q6UVK1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CSPG4Q6UVK1 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CSPG4Q6UVK1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CSPG4Q6UVK1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.75■□□□□ 0.75
CSPG4Q6UVK1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
CSPG4Q6UVK1 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 AL031432.3-201ENST00000607698 485 ntBASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 AC142381.2-201ENST00000566120 298 ntBASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 MTDHP2-201ENST00000601468 714 ntBASIC19.73■□□□□ 0.75
CSPG4Q6UVK1 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CSPG4Q6UVK1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CSPG4Q6UVK1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CSPG4Q6UVK1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CSPG4Q6UVK1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CSPG4Q6UVK1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CSPG4Q6UVK1 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CSPG4Q6UVK1 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CSPG4Q6UVK1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CSPG4Q6UVK1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CSPG4Q6UVK1 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CSPG4Q6UVK1 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.7■□□□□ 0.74
CSPG4Q6UVK1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CSPG4Q6UVK1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.7■□□□□ 0.74
CSPG4Q6UVK1 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CSPG4Q6UVK1 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.7■□□□□ 0.74
CSPG4Q6UVK1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CSPG4Q6UVK1 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSPG4Q6UVK1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.69■□□□□ 0.74
CSPG4Q6UVK1 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSPG4Q6UVK1 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSPG4Q6UVK1 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CSPG4Q6UVK1 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSPG4Q6UVK1 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.69■□□□□ 0.74
CSPG4Q6UVK1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CSPG4Q6UVK1 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSPG4Q6UVK1 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSPG4Q6UVK1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.68■□□□□ 0.74
CSPG4Q6UVK1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.68■□□□□ 0.74
CSPG4Q6UVK1 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 AC135279.3-201ENST00000610945 1311 ntBASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 AC087623.3-201ENST00000607047 1098 ntBASIC19.67■□□□□ 0.74
CSPG4Q6UVK1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CSPG4Q6UVK1 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CSPG4Q6UVK1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CSPG4Q6UVK1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.66■□□□□ 0.74
CSPG4Q6UVK1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms