Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
HNF4AP41235 NTF6A-201ENST00000591175 560 ntBASIC22.94■■□□□ 1.26
HNF4AP41235 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HNF4AP41235 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HNF4AP41235 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HNF4AP41235 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HNF4AP41235 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.93■■□□□ 1.26
HNF4AP41235 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HNF4AP41235 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.93■■□□□ 1.26
HNF4AP41235 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
HNF4AP41235 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HNF4AP41235 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
HNF4AP41235 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
HNF4AP41235 KRT18P60-201ENST00000312876 1297 ntBASIC22.92■■□□□ 1.26
HNF4AP41235 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.92■■□□□ 1.26
HNF4AP41235 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
HNF4AP41235 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
HNF4AP41235 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
HNF4AP41235 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HNF4AP41235 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HNF4AP41235 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
HNF4AP41235 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HNF4AP41235 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.91■■□□□ 1.26
HNF4AP41235 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.91■■□□□ 1.26
HNF4AP41235 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.91■■□□□ 1.26
HNF4AP41235 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
HNF4AP41235 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
HNF4AP41235 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.9■■□□□ 1.26
HNF4AP41235 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
HNF4AP41235 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.9■■□□□ 1.26
HNF4AP41235 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.9■■□□□ 1.26
HNF4AP41235 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HNF4AP41235 SLC6A10P-202ENST00000431994 2058 ntBASIC22.89■■□□□ 1.26
HNF4AP41235 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
HNF4AP41235 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HNF4AP41235 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HNF4AP41235 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HNF4AP41235 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
HNF4AP41235 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
HNF4AP41235 SPCS2P3-201ENST00000500401 656 ntBASIC22.89■■□□□ 1.25
HNF4AP41235 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HNF4AP41235 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
HNF4AP41235 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
HNF4AP41235 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
HNF4AP41235 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.88■■□□□ 1.25
HNF4AP41235 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HNF4AP41235 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HNF4AP41235 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.88■■□□□ 1.25
HNF4AP41235 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC22.88■■□□□ 1.25
HNF4AP41235 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.87■■□□□ 1.25
HNF4AP41235 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HNF4AP41235 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HNF4AP41235 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
HNF4AP41235 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HNF4AP41235 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
HNF4AP41235 AC129492.7-201ENST00000622992 756 ntBASIC22.87■■□□□ 1.25
HNF4AP41235 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HNF4AP41235 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
HNF4AP41235 AC138932.3-201ENST00000567634 1902 ntBASIC22.86■■□□□ 1.25
HNF4AP41235 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
HNF4AP41235 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
HNF4AP41235 DUX4L9-201ENST00000449051 1259 ntBASIC22.86■■□□□ 1.25
HNF4AP41235 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.86■■□□□ 1.25
HNF4AP41235 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.86■■□□□ 1.25
HNF4AP41235 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HNF4AP41235 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
HNF4AP41235 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.85■■□□□ 1.25
HNF4AP41235 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HNF4AP41235 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HNF4AP41235 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
HNF4AP41235 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HNF4AP41235 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
HNF4AP41235 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HNF4AP41235 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
HNF4AP41235 AC018755.3-202ENST00000596210 929 ntBASIC22.85■■□□□ 1.25
HNF4AP41235 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
HNF4AP41235 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
HNF4AP41235 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HNF4AP41235 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HNF4AP41235 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
HNF4AP41235 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HNF4AP41235 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HNF4AP41235 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
HNF4AP41235 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
HNF4AP41235 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
HNF4AP41235 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
HNF4AP41235 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.84■■□□□ 1.25
HNF4AP41235 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
HNF4AP41235 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
HNF4AP41235 DUX4L18-201ENST00000553347 1267 ntBASIC22.83■■□□□ 1.25
HNF4AP41235 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
HNF4AP41235 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms