Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.21■■□□□ 1.15
CLPTM1O96005 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
CLPTM1O96005 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CLPTM1O96005 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLPTM1O96005 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.21■■□□□ 1.15
CLPTM1O96005 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLPTM1O96005 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLPTM1O96005 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.2■■□□□ 1.14
CLPTM1O96005 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLPTM1O96005 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLPTM1O96005 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLPTM1O96005 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC22.2■■□□□ 1.14
CLPTM1O96005 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLPTM1O96005 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLPTM1O96005 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLPTM1O96005 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLPTM1O96005 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLPTM1O96005 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLPTM1O96005 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLPTM1O96005 LINC00273-201ENST00000539813 1452 ntBASIC22.19■■□□□ 1.14
CLPTM1O96005 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.19■■□□□ 1.14
CLPTM1O96005 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.19■■□□□ 1.14
CLPTM1O96005 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLPTM1O96005 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLPTM1O96005 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CLPTM1O96005 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CLPTM1O96005 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.18■■□□□ 1.14
CLPTM1O96005 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.18■■□□□ 1.14
CLPTM1O96005 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.18■■□□□ 1.14
CLPTM1O96005 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CLPTM1O96005 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
CLPTM1O96005 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CLPTM1O96005 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CLPTM1O96005 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CLPTM1O96005 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CLPTM1O96005 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CLPTM1O96005 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
CLPTM1O96005 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
CLPTM1O96005 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.16■■□□□ 1.14
CLPTM1O96005 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLPTM1O96005 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.16■■□□□ 1.14
CLPTM1O96005 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.16■■□□□ 1.14
CLPTM1O96005 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.16■■□□□ 1.14
CLPTM1O96005 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.16■■□□□ 1.14
CLPTM1O96005 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CLPTM1O96005 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLPTM1O96005 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CLPTM1O96005 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
CLPTM1O96005 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLPTM1O96005 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
CLPTM1O96005 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.16■■□□□ 1.14
CLPTM1O96005 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.16■■□□□ 1.14
CLPTM1O96005 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CLPTM1O96005 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.15■■□□□ 1.14
CLPTM1O96005 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CLPTM1O96005 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.15■■□□□ 1.14
CLPTM1O96005 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CLPTM1O96005 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CLPTM1O96005 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CLPTM1O96005 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CLPTM1O96005 AL117328.2-201ENST00000624617 1940 ntBASIC22.14■■□□□ 1.13
CLPTM1O96005 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
CLPTM1O96005 LINC01971-201ENST00000617888 1048 ntBASIC22.13■■□□□ 1.13
CLPTM1O96005 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLPTM1O96005 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLPTM1O96005 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.13■■□□□ 1.13
CLPTM1O96005 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLPTM1O96005 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLPTM1O96005 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CLPTM1O96005 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CLPTM1O96005 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.12■■□□□ 1.13
CLPTM1O96005 AP003733.4-201ENST00000623785 1697 ntBASIC22.12■■□□□ 1.13
CLPTM1O96005 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLPTM1O96005 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CLPTM1O96005 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.12■■□□□ 1.13
CLPTM1O96005 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.12■■□□□ 1.13
CLPTM1O96005 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLPTM1O96005 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CLPTM1O96005 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CLPTM1O96005 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.11■■□□□ 1.13
CLPTM1O96005 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.11■■□□□ 1.13
CLPTM1O96005 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CLPTM1O96005 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CLPTM1O96005 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CLPTM1O96005 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CLPTM1O96005 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CLPTM1O96005 AC135983.2-203ENST00000454486 1613 ntBASIC22.1■■□□□ 1.13
CLPTM1O96005 WHAMMP2-203ENST00000563942 1603 ntBASIC22.1■■□□□ 1.13
CLPTM1O96005 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
CLPTM1O96005 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.1■■□□□ 1.13
CLPTM1O96005 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
CLPTM1O96005 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CLPTM1O96005 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.1■■□□□ 1.13
CLPTM1O96005 DUX4L11-201ENST00000611504 1267 ntBASIC22.1■■□□□ 1.13
CLPTM1O96005 DUX4L12-201ENST00000614593 1267 ntBASIC22.1■■□□□ 1.13
CLPTM1O96005 DUX4L14-201ENST00000621227 1267 ntBASIC22.1■■□□□ 1.13
CLPTM1O96005 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.1■■□□□ 1.13
CLPTM1O96005 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.09■■□□□ 1.13
CLPTM1O96005 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.09■■□□□ 1.13
CLPTM1O96005 C9orf163-202ENST00000624034 2573 ntBASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms