Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1AO00555 IRS3P-201ENST00000223076 1006 ntBASIC23.09■■□□□ 1.29
CACNA1AO00555 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.09■■□□□ 1.29
CACNA1AO00555 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1AO00555 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1AO00555 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.09■■□□□ 1.29
CACNA1AO00555 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1AO00555 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
CACNA1AO00555 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1AO00555 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.08■■□□□ 1.28
CACNA1AO00555 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.08■■□□□ 1.28
CACNA1AO00555 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.08■■□□□ 1.28
CACNA1AO00555 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1AO00555 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.07■■□□□ 1.28
CACNA1AO00555 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.07■■□□□ 1.28
CACNA1AO00555 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1AO00555 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CACNA1AO00555 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CACNA1AO00555 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.06■■□□□ 1.28
CACNA1AO00555 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.06■■□□□ 1.28
CACNA1AO00555 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1AO00555 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1AO00555 KRT18P10-201ENST00000388836 1287 ntBASIC23.06■■□□□ 1.28
CACNA1AO00555 KRT18P5-201ENST00000436075 1291 ntBASIC23.06■■□□□ 1.28
CACNA1AO00555 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC23.05■■□□□ 1.28
CACNA1AO00555 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.05■■□□□ 1.28
CACNA1AO00555 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1AO00555 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1AO00555 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1AO00555 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1AO00555 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1AO00555 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.04■■□□□ 1.28
CACNA1AO00555 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1AO00555 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1AO00555 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.03■■□□□ 1.28
CACNA1AO00555 AC100797.4-201ENST00000631653 1827 ntBASIC23.02■■□□□ 1.28
CACNA1AO00555 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.27
CACNA1AO00555 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.02■■□□□ 1.27
CACNA1AO00555 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.02■■□□□ 1.27
CACNA1AO00555 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.02■■□□□ 1.27
CACNA1AO00555 AC011551.1-201ENST00000614101 683 ntBASIC23.02■■□□□ 1.27
CACNA1AO00555 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1AO00555 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.01■■□□□ 1.27
CACNA1AO00555 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1AO00555 AL135925.1-201ENST00000605920 1701 ntBASIC23.01■■□□□ 1.27
CACNA1AO00555 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1AO00555 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1AO00555 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1AO00555 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23■■□□□ 1.27
CACNA1AO00555 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23■■□□□ 1.27
CACNA1AO00555 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23■■□□□ 1.27
CACNA1AO00555 SRD5A1P1-201ENST00000442297 786 ntBASIC23■■□□□ 1.27
CACNA1AO00555 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23■■□□□ 1.27
CACNA1AO00555 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC23■■□□□ 1.27
CACNA1AO00555 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
CACNA1AO00555 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CACNA1AO00555 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.99■■□□□ 1.27
CACNA1AO00555 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC22.99■■□□□ 1.27
CACNA1AO00555 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1AO00555 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1AO00555 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1AO00555 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.98■■□□□ 1.27
CACNA1AO00555 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.98■■□□□ 1.27
CACNA1AO00555 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CACNA1AO00555 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CACNA1AO00555 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.97■■□□□ 1.27
CACNA1AO00555 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.97■■□□□ 1.27
CACNA1AO00555 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.97■■□□□ 1.27
CACNA1AO00555 AC027682.1-201ENST00000562846 899 ntBASIC22.97■■□□□ 1.27
CACNA1AO00555 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CACNA1AO00555 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
CACNA1AO00555 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.97■■□□□ 1.27
CACNA1AO00555 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
CACNA1AO00555 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CACNA1AO00555 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CACNA1AO00555 ARL16-209ENST00000573715 763 ntTSL 3 BASIC22.96■■□□□ 1.27
CACNA1AO00555 ARL16-211ENST00000576135 694 ntTSL 3 BASIC22.96■■□□□ 1.27
CACNA1AO00555 AP004833.2-201ENST00000532228 1454 ntBASIC22.96■■□□□ 1.27
CACNA1AO00555 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
CACNA1AO00555 AL031602.1-201ENST00000633169 911 ntBASIC22.96■■□□□ 1.27
CACNA1AO00555 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.95■■□□□ 1.27
CACNA1AO00555 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
CACNA1AO00555 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CACNA1AO00555 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
CACNA1AO00555 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC22.95■■□□□ 1.26
CACNA1AO00555 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CACNA1AO00555 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CACNA1AO00555 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC22.95■■□□□ 1.26
CACNA1AO00555 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CACNA1AO00555 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.94■■□□□ 1.26
CACNA1AO00555 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CACNA1AO00555 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CACNA1AO00555 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC22.93■■□□□ 1.26
CACNA1AO00555 DUX4L2-201ENST00000561772 1275 ntBASIC22.93■■□□□ 1.26
CACNA1AO00555 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.93■■□□□ 1.26
CACNA1AO00555 DUX4L6-201ENST00000626483 1275 ntBASIC22.93■■□□□ 1.26
CACNA1AO00555 DUX4L1-201ENST00000627662 1275 ntBASIC22.93■■□□□ 1.26
CACNA1AO00555 DUX4L8-201ENST00000629013 1275 ntBASIC22.93■■□□□ 1.26
CACNA1AO00555 DUX4L3-201ENST00000630187 1275 ntBASIC22.93■■□□□ 1.26
CACNA1AO00555 DUX4L7-201ENST00000630678 1275 ntBASIC22.93■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms