Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AC067863.1-201ENST00000494933 530 ntBASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 RNA5SP410-201ENST00000516285 106 ntBASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AC027796.2-201ENST00000575326 344 ntBASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AL365330.1-201ENST00000607459 531 ntBASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 AC007967.4-201ENST00000614700 386 ntBASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ECHDC3Q96DC8 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
ECHDC3Q96DC8 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
ECHDC3Q96DC8 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
ECHDC3Q96DC8 REXO1L8P-201ENST00000604378 1897 ntBASIC16.39■□□□□ 0.22
ECHDC3Q96DC8 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
ECHDC3Q96DC8 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 TUBB3P1-201ENST00000405796 1332 ntBASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
ECHDC3Q96DC8 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 FAM86GP-201ENST00000448322 971 ntBASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 CYMP-203ENST00000474680 1263 ntBASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 MIR4453-201ENST00000584019 89 ntBASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 MIR4321-201ENST00000592276 80 ntBASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ECHDC3Q96DC8 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms