Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CCDC58Q4VC31 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AC004817.3-201ENST00000602957 2129 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AC091607.1-201ENST00000490318 1060 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AC022616.7-201ENST00000525383 220 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AP005901.3-202ENST00000581653 237 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AC073592.4-201ENST00000623827 446 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 TOP3BP1-201ENST00000420768 1380 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AC023908.3-201ENST00000564211 3047 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC58Q4VC31 AC006449.6-201ENST00000612330 2296 ntBASIC14.8□□□□□ -0.04
CCDC58Q4VC31 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 AC243591.1-201ENST00000452967 1364 ntBASIC14.79□□□□□ -0.04
CCDC58Q4VC31 AC093827.2-201ENST00000512654 315 ntBASIC14.79□□□□□ -0.04
CCDC58Q4VC31 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 NTF6B-201ENST00000591913 560 ntBASIC14.79□□□□□ -0.04
CCDC58Q4VC31 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 AL121672.3-201ENST00000608644 468 ntBASIC14.79□□□□□ -0.04
CCDC58Q4VC31 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC58Q4VC31 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms