Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
YBX1P67809 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
YBX1P67809 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.05■□□□□ 0.16
YBX1P67809 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.05■□□□□ 0.16
YBX1P67809 MTHFR-217ENST00000641820 1569 ntBASIC16.05■□□□□ 0.16
YBX1P67809 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.05■□□□□ 0.16
YBX1P67809 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.05■□□□□ 0.16
YBX1P67809 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.05■□□□□ 0.16
YBX1P67809 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
YBX1P67809 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.05■□□□□ 0.16
YBX1P67809 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.05■□□□□ 0.16
YBX1P67809 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 MTDHP5-201ENST00000598980 586 ntBASIC16.05■□□□□ 0.16
YBX1P67809 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.05■□□□□ 0.16
YBX1P67809 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
YBX1P67809 AL139011.1-202ENST00000642063 584 ntBASIC16.05■□□□□ 0.16
YBX1P67809 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
YBX1P67809 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.05■□□□□ 0.16
YBX1P67809 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
YBX1P67809 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.04■□□□□ 0.16
YBX1P67809 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
YBX1P67809 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 OR6D1P-202ENST00000641007 5290 ntBASIC16.04■□□□□ 0.16
YBX1P67809 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
YBX1P67809 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
YBX1P67809 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.04■□□□□ 0.16
YBX1P67809 AC092474.2-201ENST00000424288 719 ntBASIC16.04■□□□□ 0.16
YBX1P67809 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.04■□□□□ 0.16
YBX1P67809 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.04■□□□□ 0.16
YBX1P67809 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.04■□□□□ 0.16
YBX1P67809 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.04■□□□□ 0.16
YBX1P67809 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.04■□□□□ 0.16
YBX1P67809 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.04■□□□□ 0.16
YBX1P67809 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.04■□□□□ 0.16
YBX1P67809 C20orf181-201ENST00000623918 480 ntBASIC16.04■□□□□ 0.16
YBX1P67809 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.04■□□□□ 0.16
YBX1P67809 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.04■□□□□ 0.16
YBX1P67809 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.04■□□□□ 0.16
YBX1P67809 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
YBX1P67809 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
YBX1P67809 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.04■□□□□ 0.16
YBX1P67809 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
YBX1P67809 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.03■□□□□ 0.16
YBX1P67809 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.03■□□□□ 0.16
YBX1P67809 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.03■□□□□ 0.16
YBX1P67809 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
YBX1P67809 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms